/// <summary>
/// Construct with the default distribution parameters, and a new random source.
/// </summary>
public BoxMullerGaussianSampler()
: this(0.0, 1.0, RandomDefaults.CreateRandomSource())
{
}
/// <summary>
/// Construct with the given distribution parameters, and a new random source.
/// </summary>
/// <param name="mean">Distribution mean.</param>
/// <param name="stdDev">Distribution standard deviation.</param>
/// <param name="seed">Random source seed.</param>
public BoxMullerGaussianSampler(double mean, double stdDev, ulong seed)
: this(mean, stdDev, RandomDefaults.CreateRandomSource(seed))
{
}
/// <summary>
/// Construct with the default distribution parameters, and a new random source.
/// </summary>
public ZigguratGaussianSampler()
: this(0.0, 1.0, RandomDefaults.CreateRandomSource())
{
}
/// <summary>
/// Construct with the given distribution parameters, and a new random source.
/// </summary>
/// <param name="mean">Distribution mean.</param>
/// <param name="stdDev">Distribution standard deviation.</param>
public ZigguratGaussianSampler(double mean, double stdDev)
: this(mean, stdDev, RandomDefaults.CreateRandomSource())
{
}
/// <summary>
/// Construct a uniform distribution generator with the provided random seed.
/// If {signed} is false the distribution interval is [0, scale), otherwise it is (-scale, +scale).
/// </summary>
public UniformDistribution(float scale, bool signed, ulong seed)
: this(scale, signed, RandomDefaults.CreateRandomSource(seed))
{
}
public void TestCreateGenome()
{
var metaNeatGenome = new MetaNeatGenome <double>(
inputNodeCount: 10,
outputNodeCount: 20,
isAcyclic: true,
activationFn: new SharpNeat.NeuralNet.Double.ActivationFunctions.ReLU());
var genomeBuilder = NeatGenomeBuilderFactory <double> .Create(metaNeatGenome);
int count = 100;
NeatPopulation <double> pop = NeatPopulationFactory <double> .CreatePopulation(metaNeatGenome, 0.1, count, RandomDefaults.CreateRandomSource());
var strategy = new UniformCrossoverReproductionStrategy <double>(
pop.MetaNeatGenome, genomeBuilder,
pop.GenomeIdSeq, pop.GenerationSeq,
RandomDefaults.CreateRandomSource());
IRandomSource rng = RandomDefaults.CreateRandomSource(0);
var cyclicGraphAnalysis = new CyclicGraphAnalysis();
for (int i = 0; i < 1000; i++)
{
// Randomly select two parents from the population.
var genome1 = pop.GenomeList[rng.Next(count)];
var genome2 = pop.GenomeList[rng.Next(count)];
var childGenome = strategy.CreateGenome(genome1, genome2);
// The connection genes should be sorted.
Assert.IsTrue(SortUtils.IsSortedAscending(childGenome.ConnectionGenes._connArr));
// The child genome should describe an acyclic graph, i.e. the new connection should not have
// formed a cycle in the graph.
var digraph = childGenome.DirectedGraph;
Assert.IsFalse(cyclicGraphAnalysis.IsCyclic(digraph));
// The child genome node IDs should be a superset of those from parent1 + parent2.
var childNodeIdSet = GetNodeIdSet(childGenome);
var parentIdSet = GetNodeIdSet(genome1);
parentIdSet.IntersectWith(GetNodeIdSet(genome2));
Assert.IsTrue(childNodeIdSet.IsSupersetOf(parentIdSet));
}
}
/// <summary>
/// Construct a uniform distribution generator over the interval [0,1).
/// </summary>
public UniformDistribution()
: this(1f, false, RandomDefaults.CreateRandomSource())
{
}
/// <summary>
/// Construct a uniform distribution generator over the interval [0,1) with the provided random seed.
/// </summary>
public UniformDistribution(ulong seed)
: this(1f, false, RandomDefaults.CreateRandomSource(seed))
{
}
public void TestInitialConnections()
{
MetaNeatGenome <double> metaNeatGenome = new MetaNeatGenome <double>(
inputNodeCount: 100,
outputNodeCount: 200,
isAcyclic: true,
activationFn: new NeuralNet.Double.ActivationFunctions.ReLU());
NeatPopulation <double> neatPop = NeatPopulationFactory <double> .CreatePopulation(metaNeatGenome, 0.5, 1, RandomDefaults.CreateRandomSource());
NeatGenome <double> genome = neatPop.GenomeList[0];
Assert.AreEqual(10000, genome.ConnectionGenes.Length);
Assert.IsTrue(SortUtils.IsSortedAscending(genome.ConnectionGenes._connArr));
CalcWeightMinMaxMean(genome.ConnectionGenes._weightArr, out double min, out double max, out double mean);
Assert.IsTrue(min < -genome.MetaNeatGenome.ConnectionWeightScale * 0.98);
Assert.IsTrue(max > genome.MetaNeatGenome.ConnectionWeightScale * 0.98);
Assert.IsTrue(Math.Abs(mean) < 0.1);
}
/// <summary>
/// Construct with the given distribution and a new random source.
/// </summary>
/// <param name="max">Maximum absolute value.</param>
/// <param name="signed">Indicates if the distribution interval includes negative values.</param>
/// <param name="seed">Random source seed.</param>
public UniformDistributionSampler(float max, bool signed, ulong seed)
: this(max, signed, RandomDefaults.CreateRandomSource(seed))
{
}
public void TestCreatePopulation()
{
MetaNeatGenome <double> metaNeatGenome = new MetaNeatGenome <double>(
inputNodeCount: 3,
outputNodeCount: 2,
isAcyclic: true,
activationFn: new NeuralNet.Double.ActivationFunctions.ReLU());
int count = 10;
NeatPopulation <double> neatPop = NeatPopulationFactory <double> .CreatePopulation(metaNeatGenome, 1.0, count, RandomDefaults.CreateRandomSource());
Assert.AreEqual(count, neatPop.GenomeList.Count);
Assert.AreEqual(count, neatPop.GenomeIdSeq.Peek);
// The population factory assigns the same innovation IDs to matching structures in the genomes it creates.
// In this test there are 5 nodes and 6 connections in each genome, and they are each identifiably
// the same structure in each of the genomes (e.g. input 0 or whatever) and so have the same innovation ID
// across all of the genomes.
// Thus in total although we created N genomes there are only 5 innovation IDs allocated (5 nodes).
Assert.AreEqual(5, neatPop.InnovationIdSeq.Peek);
// Loop the created genomes.
for (int i = 0; i < count; i++)
{
var genome = neatPop.GenomeList[i];
Assert.AreEqual(i, genome.Id);
Assert.AreEqual(0, genome.BirthGeneration);
TestGenome(genome);
}
}
/// <summary>
/// Construct with the given distribution and a new random source.
/// </summary>
/// <param name="dist">Discrete distribution.</param>
/// <param name="seed">Random source seed.</param>
public DiscreteDistributionSampler(DiscreteDistribution dist, ulong seed)
{
_dist = dist;
_rng = RandomDefaults.CreateRandomSource(seed);
}
private static Species <double> CreateTestSpecies(int genomeCount)
{
// Create the species genomes; we use NeatPopulationFactory for this.
MetaNeatGenome <double> metaNeatGenome = new(
inputNodeCount : 1,
outputNodeCount : 1,
isAcyclic : true,
activationFn : new SharpNeat.NeuralNets.Double.ActivationFunctions.ReLU());
NeatPopulation <double> neatPop = NeatPopulationFactory <double> .CreatePopulation(metaNeatGenome, 1.0, genomeCount, RandomDefaults.CreateRandomSource());
// Create the species object, and assign all of the created genomes to it.
var species = new Species <double>(0, new ConnectionGenes <double>(0));
species.GenomeList.AddRange(neatPop.GenomeList);
// Return the species.
return(species);
}
/// <summary>
/// Construct with the given distribution parameters, and a new random source.
/// </summary>
/// <param name="mean">Distribution mean.</param>
/// <param name="stdDev">Distribution standard deviation.</param>
public BoxMullerGaussianSampler(float mean, float stdDev)
: this(mean, stdDev, RandomDefaults.CreateRandomSource())
{
}
private static NeatPopulation <double> CreateNeatPopulation(
int count,
int inputNodeCount,
int outputNodeCount,
double connectionsProportion)
{
MetaNeatGenome <double> metaNeatGenome = new MetaNeatGenome <double>(
inputNodeCount: inputNodeCount,
outputNodeCount: outputNodeCount,
isAcyclic: true,
activationFn: new SharpNeat.NeuralNets.Double.ActivationFunctions.ReLU());
NeatPopulation <double> neatPop = NeatPopulationFactory <double> .CreatePopulation(metaNeatGenome, connectionsProportion, count, RandomDefaults.CreateRandomSource());
return(neatPop);
}