public void save_data()
{
try
{
string fileNameofNet = file;
string data_name = String.Format("{0}\\{1}_{2}_{3}_{4}.txt", Path.GetDirectoryName(file),
Path.GetFileNameWithoutExtension(file),
X.ToString(),
Y.ToString(),
DateTime.Now.ToString("yyyy_MM_dd_HH_mm_ss"));
using (StreamWriter file_stream = new StreamWriter(data_name))
{
file_stream.WriteLine("selected X and Y");
file_stream.WriteLine("{0}\t{1}", X.ToString(), Y.ToString());
file_stream.WriteLine("X selected file");
file_stream.WriteLine(scanNamesListSelected[X] + " — " + sampleScanListSelected[X]);
file_stream.WriteLine("Y selected file");
file_stream.WriteLine(scanNamesListSelected[Y] + " — " + sampleScanListSelected[Y]);
file_stream.WriteLine("Threshold value and outliers level");
file_stream.WriteLine("{0}\t{1}", threshold.ToString(), threshold_outliers.ToString());
file_stream.WriteLine("m/z array values");
file_stream.WriteLine(R_matrix.mz_array.ToString <double>().Replace(' ', '\t'));
file_stream.WriteLine("scan X included values");
file_stream.WriteLine(R_matrix.scan(X).Multiply(mz_id_to_process).ToString <double>().Replace(' ', '\t'));
file_stream.WriteLine("scan X excluded values");
file_stream.WriteLine(R_matrix.scan(X).Multiply(mz_id_to_process.Multiply(-1).Add(1)).ToString <double>().Replace(' ', '\t'));
file_stream.WriteLine("scan Y included values");
file_stream.WriteLine(R_matrix.scan(Y).Multiply(mz_id_to_process).ToString <double>().Replace(' ', '\t'));
file_stream.WriteLine("scan Y excluded values");
file_stream.WriteLine(R_matrix.scan(Y).Multiply(mz_id_to_process.Multiply(-1).Add(1)).ToString <double>().Replace(' ', '\t'));
file_stream.WriteLine("Similarity matrix");
for (int i = 0; i < R_matrix.matrix.Rows(); i++)
{
file_stream.WriteLine(R_matrix.matrix.GetRow(i).ToString <double>().Replace(' ', '\t'));
}
file_stream.Close();
}
}
catch (Exception)
{ }
}
public void clicked_pixel(int X, int Y)
{
picture_R.Refresh();
GraphPane plot1 = master.PaneList[0];
GraphPane plot2 = master.PaneList[1];
plot1.CurveList.Clear();
plot2.CurveList.Clear();
plot1.YAxis.Scale.Min = 0;
plot2.YAxis.Scale.Min = 0;
LineItem myCurve1 = plot1.AddCurve("Included in calculations", R_matrix.mz_array, R_matrix.scan(Y).Multiply(mz_id_to_process.Add(-0.5).Multiply(2)), Color.Blue, SymbolType.None);
LineItem myCurve2 = plot2.AddCurve("", R_matrix.mz_array, R_matrix.scan(X).Multiply(mz_id_to_process.Add(-0.5).Multiply(2)), Color.Blue, SymbolType.None);
LineItem myCurve3 = plot1.AddCurve("Excluded from calculations", R_matrix.mz_array, R_matrix.scan(Y).Multiply(mz_id_to_process.Add(-0.5).Multiply(-2)), Color.Red, SymbolType.None);
LineItem myCurve4 = plot2.AddCurve("", R_matrix.mz_array, R_matrix.scan(X).Multiply(mz_id_to_process.Add(-0.5).Multiply(-2)), Color.Red, SymbolType.None);
plot1.Legend.Position = LegendPos.Float;
plot1.Legend.Location.CoordinateFrame = CoordType.ChartFraction;
plot1.Legend.Location.AlignH = AlignH.Right;
plot1.Legend.Location.AlignV = AlignV.Top;
plot1.Legend.Location.TopLeft = new PointF(1.0f - 0.02f, 0.02f);
plot1.XAxis.Title.FontSpec.Size = 20.0f;
plot2.XAxis.Title.FontSpec.Size = 20.0f;
plot1.YAxis.Title.FontSpec.Size = 20.0f;
plot2.YAxis.Title.FontSpec.Size = 20.0f;
plot1.Title.FontSpec.Size = 20.0f;
plot2.Title.FontSpec.Size = 20.0f;
plot1.XAxis.Title.Text = "m/z, Th";
plot2.XAxis.Title.Text = "m/z, Th";
plot1.YAxis.Title.Text = "intensity";
plot2.YAxis.Title.Text = "intensity";
plot1.Title.Text = scanNamesListSelected[Y] + " — " + sampleScanListSelected[Y];
plot2.Title.Text = scanNamesListSelected[X] + " — " + sampleScanListSelected[X];
labelR.Text = "R=" + (R_matrix.matrix[X, Y]).ToString();
zgc.AxisChange();
zgc.Invalidate();
zgc.Refresh();
}
