protected override void Context()
{
base.Context();
_event = A.Fake <PKSimEvent>();
_eventTemplate = A.Fake <IEventGroupBuilder>();
A.CallTo(() => _eventFactory.Create(_eventTemplate)).Returns(_event);
}
protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_eventMappingFactory = A.Fake <IEventMappingFactory>();
sut = new EventMappingMapper(_parameterMapper, _eventMappingFactory);
_event = new PKSimEvent()
.WithName("E1")
.WithId("EventId");
_eventMapping = new EventMapping
{
TemplateEventId = _event.Id,
StartTime = DomainHelperForSpecs.ConstantParameterWithValue(1)
};
_snapshotEventStartTime1 = new Parameter {
Name = "P1"
};
_project = new PKSimProject();
_project.AddBuildingBlock(_event);
A.CallTo(() => _parameterMapper.MapToSnapshot(_eventMapping.StartTime)).Returns(_snapshotEventStartTime1);
return(_completed);
}
protected override void Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_eventFactory = A.Fake <IEventFactory>();
sut = new EventMapper(_parameterMapper, _eventFactory);
_parameter1 = DomainHelperForSpecs.ConstantParameterWithValue(5, isDefault: false)
.WithName("Param1");
_parameter2 = DomainHelperForSpecs.ConstantParameterWithValue(5, isDefault: true)
.WithName("Param2");
_hiddenParameter = DomainHelperForSpecs.ConstantParameterWithValue(5, isDefault: false)
.WithName("Param3");
_hiddenParameter.Visible = false;
_event = new PKSimEvent
{
Name = "Event",
TemplateName = "TemplateEventName",
Description = "Amazing event"
};
_event.Add(_parameter1);
_event.Add(_parameter2);
_event.Add(_hiddenParameter);
A.CallTo(() => _parameterMapper.MapToSnapshot(_parameter1)).Returns(new Parameter().WithName(_parameter1.Name));
A.CallTo(() => _parameterMapper.MapToSnapshot(_parameter2)).Returns(new Parameter().WithName(_parameter2.Name));
A.CallTo(() => _parameterMapper.MapToSnapshot(_hiddenParameter)).Returns(new Parameter().WithName(_hiddenParameter.Name));
}
protected override void Context()
{
base.Context();
_eventDTO = new ObjectBaseDTO();
_event = A.Fake <PKSimEvent>();
A.CallTo(() => _eventFactory.Create()).Returns(_event);
A.CallTo(() => _dtoFactory.CreateFor <PKSimEvent>()).Returns(_eventDTO);
}
private void updateEventInMapping(EventMappingDTO eventMappingDTO, PKSimEvent pkSimEvent)
{
if (pkSimEvent == null)
{
return;
}
eventMappingDTO.Event = pkSimEvent;
_view.RefreshData();
OnStatusChanged();
}
private void convertEvent(PKSimEvent pkSimEvent)
{
if (pkSimEvent == null)
{
return;
}
var templateEvent = _eventGroupRepository.FindByName(pkSimEvent.TemplateName);
updateIsInputStateByNameAndValue(pkSimEvent, templateEvent);
}
public void EditEvent(PKSimEvent pkSimEvent)
{
var template = _eventGroupRepository.FindByName(pkSimEvent.TemplateName);
_eventDTO = new EventDTO {
Description = _representationInfoRepository.InfoFor(template).Description, Template = template
};
_eventParametersPresenter.EditParameters(pkSimEvent.AllParameters(p => !p.IsNamed(Constants.Parameters.START_TIME)));
_view.BindTo(_eventDTO);
}
public override void GlobalContext()
{
base.GlobalContext();
LoadProject("IsDefaultConversion_722");
_compound = First <Compound>();
_formulation = First <Formulation>();
_event = First <PKSimEvent>();
_simpleProtocol = First <SimpleProtocol>();
_advancedProtocol = First <AdvancedProtocol>();
_tubularSecretionProcess = _compound.AllProcesses().FirstOrDefault();
}
protected override void Context()
{
base.Context();
_simulation = new IndividualSimulation().WithId(_simulationId);
_eventParameter = DomainHelperForSpecs.ConstantParameterWithValue(10);
_eventBuildingBlockInSimulation = new PKSimEvent {
_eventParameter
};
_simulation.AddUsedBuildingBlock(new UsedBuildingBlock("TemplateId", PKSimBuildingBlockType.Event)
{
BuildingBlock = _eventBuildingBlockInSimulation
});
}
protected override void Context()
{
base.Context();
_event = new PKSimEvent();
_template = new EventGroupBuilder().WithName("toto");
_event.TemplateName = _template.Name;
A.CallTo(() => _eventGroupRepository.All()).Returns(new[] { _template });
A.CallTo(() => _representationInfoRepository.InfoFor(_template)).Returns(new RepresentationInfo {
Description = "blah"
});
sut.TemplateChanged += (o, e) =>
{
_eventRaised = true;
_newTemplate = e.Template;
};
sut.EditEvent(_event);
}
protected override void Context()
{
base.Context();
_event = new PKSimEvent();
_template = new EventGroupBuilder().WithName("toto");
_event.TemplateName = _template.Name;
A.CallTo(() => _eventGroupRepository.All()).Returns(new[] { _template });
A.CallTo(() => _representationInfoRepository.InfoFor(_template)).Returns(new RepresentationInfo {
Description = "blah"
});
_para1 = new PKSimParameter().WithName("Para1");
_para2 = new PKSimParameter().WithName("Para2");
_event.Add(_para1);
_event.Add(_para2);
A.CallTo(() => _view.BindTo(A <EventDTO> ._)).Invokes(x => _eventDTO = x.GetArgument <EventDTO>(0));
A.CallTo(() => _eventParametersPresenter.EditParameters(A <IEnumerable <IParameter> > ._)).Invokes(x => _parameters = x.GetArgument <IEnumerable <IParameter> >(0));
}
public IPKSimCommand Create()
{
_eventPropertiesDTO = _objectBaseDTOFactory.CreateFor <PKSimEvent>();
_view.BindToProperties(_eventPropertiesDTO);
Event = _eventFactory.Create();
eventSettingsPresenter.EditEvent(Event);
_view.Display();
if (_view.Canceled)
{
return(new PKSimEmptyCommand());
}
_propertiesMapper.MapProperties(_eventPropertiesDTO, Event);
return(_macroCommand);
}
public void Visit(PKSimEvent pkSimEvent)
{
_metaData = new EventMetaData();
serializeContentFor(pkSimEvent);
}
protected override Task Context()
{
_solverSettingsMapper = A.Fake <SolverSettingsMapper>();
_outputSchemaMapper = A.Fake <OutputSchemaMapper>();
_outputSelectionMapper = A.Fake <OutputSelectionsMapper>();
_parameterMapper = A.Fake <ParameterMapper>();
_compoundPropertiesMapper = A.Fake <CompoundPropertiesMapper>();
_advancedParameterMapper = A.Fake <AdvancedParameterMapper>();
_eventMappingMapper = A.Fake <EventMappingMapper>();
_observerSetMappingMapper = A.Fake <ObserverSetMappingMapper>();
_curveChartMapper = A.Fake <SimulationTimeProfileChartMapper>();
_processMappingMapper = A.Fake <ProcessMappingMapper>();
_simulationFactory = A.Fake <ISimulationFactory>();
_executionContext = A.Fake <IExecutionContext>();
_simulationModelCreator = A.Fake <ISimulationModelCreator>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_modelPropertiesTask = A.Fake <IModelPropertiesTask>();
_simulationRunner = A.Fake <ISimulationRunner>();
_populationAnalysisChartMapper = A.Fake <PopulationAnalysisChartMapper>();
_simulationParameterOriginIdUpdater = A.Fake <ISimulationParameterOriginIdUpdater>();
_logger = A.Fake <ILogger>();
_containerTask = A.Fake <IContainerTask>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
sut = new SimulationMapper(_solverSettingsMapper, _outputSchemaMapper,
_outputSelectionMapper, _compoundPropertiesMapper, _parameterMapper,
_advancedParameterMapper, _eventMappingMapper, _observerSetMappingMapper, _curveChartMapper,
_populationAnalysisChartMapper, _processMappingMapper,
_simulationFactory, _executionContext, _simulationModelCreator,
_simulationBuildingBlockUpdater, _modelPropertiesTask,
_simulationRunner, _simulationParameterOriginIdUpdater,
_logger, _containerTask, _entityPathResolver
);
_project = new PKSimProject();
_individual = new Individual {
Name = "IND", Id = "IND"
};
_compound = new Compound {
Name = "COMP", Id = "COMP"
};
_observerSet = new ObserverSet {
Name = "OBS_SET", Id = "OBS_SET"
};
_protocol = new SimpleProtocol {
Name = "PROT", Id = "PROT"
};
_inductionProcess = new InductionProcess().WithName("Interaction process");
_compound.AddProcess(_inductionProcess);
_event = new PKSimEvent {
Name = "Event"
};
_population = new RandomPopulation()
{
Name = "POP"
};
_observedData = new DataRepository("OBS_ID").WithName("OBS");
_project.AddBuildingBlock(_individual);
_project.AddBuildingBlock(_compound);
_project.AddBuildingBlock(_event);
_project.AddBuildingBlock(_population);
_project.AddBuildingBlock(_observerSet);
_project.AddObservedData(_observedData);
_simulationProperties = new SimulationProperties
{
ModelProperties = new ModelProperties
{
ModelConfiguration = new ModelConfiguration {
ModelName = "4Comp"
}
}
};
_interactionSelection = new InteractionSelection {
ProcessName = _inductionProcess.Name
};
_noInteractionSelection = new InteractionSelection {
MoleculeName = "CYP2D6"
};
_simulationProperties.InteractionProperties.AddInteraction(_interactionSelection);
_simulationProperties.InteractionProperties.AddInteraction(_noInteractionSelection);
_settings = new SimulationSettings();
_rootContainer = new Container().WithName("Sim");
_model = new OSPSuite.Core.Domain.Model {
Root = _rootContainer
};
_individualSimulation = new IndividualSimulation
{
Name = "S1",
Properties = _simulationProperties,
SimulationSettings = _settings,
Description = "Simulation Description",
Model = _model
};
_simulationTimeProfile = new SimulationTimeProfileChart();
_snapshotSimulationTimeProfile = new CurveChart();
_individualSimulation.AddAnalysis(_simulationTimeProfile);
A.CallTo(() => _curveChartMapper.MapToSnapshot(_simulationTimeProfile)).Returns(_snapshotSimulationTimeProfile);
_populationSimulation = new PopulationSimulation
{
Properties = _simulationProperties,
SimulationSettings = _settings,
Model = _model
};
_advancedParameterCollection = new AdvancedParameterCollection();
_populationSimulationAnalysisChart = new BoxWhiskerAnalysisChart();
_populationSimulation.SetAdvancedParameters(_advancedParameterCollection);
_populationSimulation.AddAnalysis(_populationSimulationAnalysisChart);
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual
});
_snapshotPopulationAnalysisChart = new Snapshots.PopulationAnalysisChart();
A.CallTo(() => _populationAnalysisChartMapper.MapToSnapshot(_populationSimulationAnalysisChart)).Returns(_snapshotPopulationAnalysisChart);
_snapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_interactionSelection)).Returns(_snapshotInteraction);
_snapshotInteraction.CompoundName = _compound.Name;
_snapshotInteraction.Name = _inductionProcess.Name;
_noSelectionSnapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_noInteractionSelection)).Returns(_noSelectionSnapshotInteraction);
_noSelectionSnapshotInteraction.MoleculeName = _noInteractionSelection.MoleculeName;
_compoundProperties = new CompoundProperties();
_snapshotCompoundProperties = new Snapshots.CompoundProperties {
Name = _compound.Name
};
_individualSimulation.Properties.AddCompoundProperties(_compoundProperties);
_eventMapping = new EventMapping();
_individualSimulation.EventProperties.AddEventMapping(_eventMapping);
_observerSetMapping = new ObserverSetMapping();
_individualSimulation.ObserverSetProperties.AddObserverSetMapping(_observerSetMapping);
A.CallTo(() => _compoundPropertiesMapper.MapToSnapshot(_compoundProperties, _project)).Returns(_snapshotCompoundProperties);
_eventSelection = new EventSelection
{
Name = _event.Name,
};
_observerSetSelection = new ObserverSetSelection
{
Name = _observerSet.Name,
};
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual,
Altered = true
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("CompTemplateId", PKSimBuildingBlockType.Compound)
{
BuildingBlock = _compound
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ProtTemplateId", PKSimBuildingBlockType.Protocol)
{
BuildingBlock = _protocol
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ObserveSetTemplateId", PKSimBuildingBlockType.ObserverSet)
{
BuildingBlock = _observerSet
});
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("PopTemplateId", PKSimBuildingBlockType.Population)
{
BuildingBlock = _population
});
_individualSimulation.AddUsedObservedData(_observedData);
A.CallTo(() => _eventMappingMapper.MapToSnapshot(_eventMapping, _project)).Returns(_eventSelection);
A.CallTo(() => _observerSetMappingMapper.MapToSnapshot(_observerSetMapping, _project)).Returns(_observerSetSelection);
_outputSelectionSnapshot = new OutputSelections();
A.CallTo(() => _outputSelectionMapper.MapToSnapshot(_individualSimulation.OutputSelections)).Returns(_outputSelectionSnapshot);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotInteraction, _inductionProcess)).Returns(_interactionSelection);
return(_completed);
}
protected override Task Context()
{
_classificationMapper = A.Fake <ClassificationMapper>();
_snapshotMapper = A.Fake <ISnapshotMapper>();
_executionContext = A.Fake <IExecutionContext>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_simulationMapper = A.Fake <SimulationMapper>();
_simulationComparisonMapper = A.Fake <SimulationComparisonMapper>();
_parameterIdentificationMapper = A.Fake <ParameterIdentificationMapper>();
_classificationSnapshotTask = A.Fake <IClassificationSnapshotTask>();
_qualificationPlanMapper = A.Fake <QualificationPlanMapper>();
_creationMetaDataFactory = A.Fake <ICreationMetaDataFactory>();
_logger = A.Fake <ILogger>();
sut = new ProjectMapper(
_simulationMapper,
_simulationComparisonMapper,
_parameterIdentificationMapper,
_qualificationPlanMapper,
_executionContext,
_classificationSnapshotTask,
_lazyLoadTask,
_creationMetaDataFactory,
_logger);
A.CallTo(() => _executionContext.Resolve <ISnapshotMapper>()).Returns(_snapshotMapper);
_individual = new Individual().WithName("IND");
_compound = new Compound().WithName("COMP");
_event = new PKSimEvent().WithName("EVENT");
_formulation = new Formulation().WithName("FORM");
_protocol = new SimpleProtocol().WithName("PROTO");
_population = new RandomPopulation().WithName("POP");
_observedData = new DataRepository().WithName("OD");
_parameterIdentification = new OSPSuite.Core.Domain.ParameterIdentifications.ParameterIdentification().WithName("PI").WithId("PI_ID");
_classifiableObservedData = new ClassifiableObservedData {
Subject = _observedData
};
_classification = new Classification {
ClassificationType = ClassificationType.ObservedData
}.WithName("OD Classification");
_simulationComparison = new IndividualSimulationComparison().WithName("COMP").WithId("SimComp");
_simulation = new IndividualSimulation().WithName("IND_SIM").WithId("IndSim");
_qualificationPlan = new QualificationPlan().WithName("QP").WithId("QP_ID");
_project = new PKSimProject();
_project.AddBuildingBlock(_individual);
_project.AddBuildingBlock(_compound);
_project.AddBuildingBlock(_event);
_project.AddBuildingBlock(_formulation);
_project.AddBuildingBlock(_protocol);
_project.AddBuildingBlock(_population);
_project.AddObservedData(_observedData);
_project.AddBuildingBlock(_simulation);
_project.AddClassifiable(_classifiableObservedData);
_project.AddClassification(_classification);
_project.AddSimulationComparison(_simulationComparison);
_project.AddParameterIdentification(_parameterIdentification);
_project.AddQualificationPlan(_qualificationPlan);
_compoundSnapshot = new Snapshots.Compound();
_individualSnapshot = new Snapshots.Individual();
_eventSnapshot = new Event();
_formulationSnapshot = new Snapshots.Formulation();
_protocolSnapshot = new Snapshots.Protocol();
_populationSnapshot = new Snapshots.Population();
_observedDataSnapshot = new Snapshots.DataRepository();
_parameterIdentificationSnapshot = new ParameterIdentification();
_observedDataClassificationSnapshot = new Snapshots.Classification();
_simulationComparisonSnapshot = new SimulationComparison();
_simulationClassificationSnapshot = new Snapshots.Classification();
_comparisonClassificationSnapshot = new Snapshots.Classification();
_parameterIdentificationClassificationSnapshot = new Snapshots.Classification();
_qualificationPlanClassificationSnapshot = new Snapshots.Classification();
_qualificationPlanSnapshot = new Snapshots.QualificationPlan();
_simulationSnapshot = new Simulation();
A.CallTo(() => _snapshotMapper.MapToSnapshot(_compound)).Returns(_compoundSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_individual)).Returns(_individualSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_event)).Returns(_eventSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_formulation)).Returns(_formulationSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_protocol)).Returns(_protocolSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_population)).Returns(_populationSnapshot);
A.CallTo(() => _snapshotMapper.MapToSnapshot(_observedData)).Returns(_observedDataSnapshot);
A.CallTo(() => _simulationMapper.MapToSnapshot(_simulation, _project)).Returns(_simulationSnapshot);
A.CallTo(() => _simulationComparisonMapper.MapToSnapshot(_simulationComparison)).Returns(_simulationComparisonSnapshot);
A.CallTo(() => _parameterIdentificationMapper.MapToSnapshot(_parameterIdentification, _project)).Returns(_parameterIdentificationSnapshot);
A.CallTo(() => _qualificationPlanMapper.MapToSnapshot(_qualificationPlan)).Returns(_qualificationPlanSnapshot);
A.CallTo(() => _classificationSnapshotTask.MapClassificationsToSnapshots <ClassifiableObservedData>(_project)).Returns(new[] { _observedDataClassificationSnapshot });
A.CallTo(() => _classificationSnapshotTask.MapClassificationsToSnapshots <ClassifiableSimulation>(_project)).Returns(new[] { _simulationClassificationSnapshot });
A.CallTo(() => _classificationSnapshotTask.MapClassificationsToSnapshots <ClassifiableComparison>(_project)).Returns(new[] { _comparisonClassificationSnapshot });
A.CallTo(() => _classificationSnapshotTask.MapClassificationsToSnapshots <ClassifiableParameterIdentification>(_project)).Returns(new[] { _parameterIdentificationClassificationSnapshot });
A.CallTo(() => _classificationSnapshotTask.MapClassificationsToSnapshots <ClassifiableQualificationPlan>(_project)).Returns(new[] { _qualificationPlanClassificationSnapshot });
return(_completed);
}
public void Visit(PKSimEvent pkSimEvent)
{
adjustDefaultStateOfAllParametersIn(pkSimEvent);
convertEvent(pkSimEvent);
}
public void Visit(PKSimEvent pkSimEvent)
{
performCommonConversion(pkSimEvent);
}
public void Visit(PKSimEvent objToVisit)
{
openPresenter(objToVisit);
}
protected override async void Because()
{
_newEvent = await sut.MapToModel(_snapshot);
}
protected override async void Because()
{
_newEvent = await sut.MapToModel(_snapshot, new SnapshotContext());
}
private void templateChanged(TemplateChangedEventArgs e)
{
_macroCommand.Clear();
Event = _eventFactory.Create(e.Template);
eventSettingsPresenter.EditEvent(Event);
}
private ITreeNode addEventToTree(PKSimEvent pkSimEvent) => addBuildingBlockToTree(pkSimEvent, PKSimRootNodeTypes.EventFolder, ApplicationIcons.Event);
