public DistributedParameterValue[] DistributionsFor(OriginData matlabOriginData, IEnumerable <MoleculeOntogeny> moleculeOntogenies)
{
var originData = originDataFrom(matlabOriginData);
var individual = _individualFactory.CreateAndOptimizeFor(originData);
return(individual.GetAllChildren <IDistributedParameter>().Select(distributedParameterValueFrom).ToArray());
}
public ParameterValue[] CreateIndividual(OriginData matlabOriginData, IEnumerable <MoleculeOntogeny> moleculeOntogenies)
{
var originData = originDataFrom(matlabOriginData);
var individual = _individualFactory.CreateAndOptimizeFor(originData);
var individualProperties = _individualPropertiesMapper.MapFrom(individual);
var allIndividualParameters = individualProperties.ParameterValues.ToList();
allIndividualParameters.AddRange(_ontogenyFactorsRetriever.FactorsFor(originData, moleculeOntogenies));
return(allIndividualParameters.ToArray());
}
public Individual DefaultIndividualFor(SpeciesPopulation speciesPopulation)
{
if (!_individualCacheProSpecies.Contains(speciesPopulation))
{
var originDataSnapshot = new OriginData
{
Species = speciesPopulation.Species,
Population = speciesPopulation.Name,
Gender = DefaultGenderFor(speciesPopulation).Name
};
var originData = _originDataMapper.MapToModel(originDataSnapshot).Result;
_individualCacheProSpecies[speciesPopulation] = _individualFactory.CreateStandardFor(originData);
}
return(_individualCacheProSpecies[speciesPopulation]);
}
public Individual DefaultIndividualFor(SpeciesPopulation speciesPopulation)
{
if (!_individualCacheProSpecies.Contains(speciesPopulation))
{
var originDataSnapshot = new OriginData
{
Species = speciesPopulation.Species,
Population = speciesPopulation.Name,
Gender = DefaultGenderFor(speciesPopulation).Name
};
//We do not need to pass any valid snapshot context in this case.
var originData = _originDataMapper.MapToModel(originDataSnapshot, new SnapshotContext()).Result;
_individualCacheProSpecies[speciesPopulation] = _individualFactory.CreateStandardFor(originData);
}
return(_individualCacheProSpecies[speciesPopulation]);
}
private Core.Model.OriginData originDataFrom(OriginData matlabOriginData) => _originDataMapper.MapToModel(matlabOriginData).Result;
public DistributedParameterValue[] DistributionsFor(OriginData matlabOriginData)
{
return(DistributionsFor(matlabOriginData, Enumerable.Empty <MoleculeOntogeny>()));
}
public ParameterValue[] CreateIndividual(OriginData matlabOriginData)
{
return(CreateIndividual(matlabOriginData, Enumerable.Empty <MoleculeOntogeny>()));
}
private Core.Model.OriginData originDataFrom(OriginData matlabOriginData) => _originDataMapper.MapToModel(matlabOriginData, new SnapshotContext()).Result;
