public void OverlapGraphTest()
{
string input = @">Rosalind_0498
AAATAAA
>Rosalind_2391
AAATTTT
>Rosalind_2323
TTTTCCC
>Rosalind_0442
AAATCCC
>Rosalind_5013
GGGTGGG";
var expected = new List <Tuple <string, string> > ()
{
Tuple.Create("Rosalind_0498", "Rosalind_2391"),
Tuple.Create("Rosalind_0498", "Rosalind_0442"),
Tuple.Create("Rosalind_2391", "Rosalind_2323")
};
var result = new List <Tuple <string, string> > (
OverlapGrapher.calculateGraph(3, FASTA.read(new StringReader(input))));
Assert.AreEqual(expected.Count, result.Count);
foreach (var pair in expected.Zip(result, (a, b) => Tuple.Create(a, b)))
{
Assert.AreEqual(pair.Item1, pair.Item2);
}
}
private static void OverlapGraph(IDictionary <string, ValueObject> args)
{
string filename = args ["<filename>"].ToString();
using (var infile = new FileStream(filename, FileMode.Open))
using (var reader = new StreamReader(infile)) {
var result = OverlapGrapher.calculateGraph(3, FASTA.read(reader));
foreach (var pair in result)
{
Console.WriteLine("{0} {1}", pair.Item1, pair.Item2);
}
}
}