protected override void Context()
{
base.Context();
_outputMapping1 = A.Fake <OutputMapping>();
_outputMapping2 = A.Fake <OutputMapping>();
_outputMapping3 = A.Fake <OutputMapping>();
var observation1 = DomainHelperForSpecs.ObservedData("OBS1");
A.CallTo(() => _outputMapping1.WeightedObservedData.ObservedData).Returns(observation1);
var observation2 = DomainHelperForSpecs.ObservedData("OBS2");
A.CallTo(() => _outputMapping2.WeightedObservedData.ObservedData).Returns(observation2);
var observation3 = DomainHelperForSpecs.ObservedData("OBS3");
A.CallTo(() => _outputMapping3.WeightedObservedData.ObservedData).Returns(observation3);
_outputResiduals1 = new OutputResiduals("OutputPath1", _outputMapping1.WeightedObservedData, new[] { new Residual(11f, 12f, 1), new Residual(21f, 22f, 1) });
_outputResiduals2 = new OutputResiduals("OutputPath2", _outputMapping2.WeightedObservedData, new[] { new Residual(31f, 32f, 1), new Residual(41f, 42f, 1) });
_outputResiduals3 = new OutputResiduals("OutputPath1", _outputMapping3.WeightedObservedData, new[] { new Residual(51f, 52f, 1), new Residual(61f, 62f, 1) });
_residualResults.AddOutputResiduals(_outputResiduals1);
_residualResults.AddOutputResiduals(_outputResiduals2);
_residualResults.AddOutputResiduals(_outputResiduals3);
A.CallTo(() => _outputMapping1.FullOutputPath).Returns("OutputPath1");
A.CallTo(() => _outputMapping2.FullOutputPath).Returns("OutputPath2");
A.CallTo(() => _outputMapping3.FullOutputPath).Returns("OutputPath1");
A.CallTo(() => _parameterIdentification.AllOutputMappings).Returns(new[] { _outputMapping1, _outputMapping2, _outputMapping3 });
A.CallTo(() => _parameterIdentification.AllObservedData).Returns(new[] { observation3, observation1, observation2 });
}
protected override void Context()
{
base.Context();
_outputResidual1 = new OutputResiduals("O1", _observedData, new[] { new Residual(1f, 5f, 1), new Residual(2f, 10f, 1) });
_outputResidual2 = new OutputResiduals("O2", _observedData, new[] { new Residual(3f, 15f, 1), new Residual(4f, 19f, 1), new Residual(4f, 20f, 1) });
_residualResults = new ResidualsResult();
_optimizationRunResult = new OptimizationRunResult {
ResidualsResult = _residualResults
};
_residualResults.AddOutputResiduals(_outputResidual1);
_residualResults.AddOutputResiduals(_outputResidual2);
_binInterval1 = new BinInterval(0, 17);
_binInterval2 = new BinInterval(18, 25);
A.CallTo(_binIntervalCreator).WithReturnType <IReadOnlyList <BinInterval> >().Returns(new[] { _binInterval1, _binInterval2 });
}
private DataRepository getOrCreateScatterDataRepositoryFor(int runIndex, OutputResiduals outputResidual)
{
var repositoryName = Captions.ParameterIdentification.SimulationResultsForRun(runIndex);
var id = $"{Chart.Id}-{outputResidual.FullOutputPath}-{outputResidual.ObservedData.Id}-{runIndex}";
var timeValues = outputResidual.Residuals.Select(x => x.Time).ToList();
var outputValues = outputResidual.Residuals.Select(x => x.Value).ToList();
var dataRepository = Chart.DataRepositories.FindById(id);
if (dataRepository == null)
{
dataRepository = createScatterDataRepository(id, repositoryName, outputResidual);
Chart.AddRepository(dataRepository);
}
dataRepository.BaseGrid.Values = timeValues.ToFloatArray();
dataRepository.FirstDataColumn().Values = outputValues.ToFloatArray();
return(dataRepository);
}
/// <summary>
/// Optimize objective function (x[0]-3)^2+(x[1]-4)^2
/// </summary>
/// <param name="values"></param>
/// <returns></returns>
protected virtual OptimizationRunResult ObjectiveFunction(IReadOnlyList <OptimizedParameterValue> values)
{
var residualResult = new ResidualsResult();
var outputResiduals = new OutputResiduals("A|B", new DataRepository(), new[]
{
new Residual(0, values[0].Value - 3, 1),
new Residual(0, values[1].Value - 4, 1)
});
residualResult.AddOutputResiduals(outputResiduals);
var optimizationRunResult = new OptimizationRunResult
{
ResidualsResult = residualResult,
Values = values,
};
if (optimizationRunResult.TotalError < _optimizationResult.TotalError)
{
_optimizationResult = optimizationRunResult;
}
return(optimizationRunResult);
}
private DataRepository createScatterDataRepository(string id, string repositoryName, OutputResiduals outputResidual)
{
var dataRepository = createEmptyRepository(id, repositoryName, "Values");
var scatterColumn = dataRepository.FirstDataColumn();
var outputPath = new List <string>(outputResidual.FullOutputPath.ToPathArray());
//need to create a unique path containing the observed data name. Since we want to keep the entity name and simulation name, we have to insert before the name
if (outputPath.Count > 0)
{
outputPath.Insert(outputPath.Count - 1, outputResidual.ObservedDataName);
}
scatterColumn.QuantityInfo.Path = outputPath;
return(dataRepository);
}
protected override void Because()
{
_residualResult = sut.Calculate(_simulationRunResultsList, _outputMappings);
_outputResiduals = _residualResult.AllOutputResidualsFor(_fullOutputPath).First();
}
private void updateOutputResidualPath(OutputResiduals residual, string oldName, string newName)
{
residual.UpdateFullOutputPath(oldName, newName);
}
