// This is the one and only main internal entry point for all validations, which in its term
// will call step 1 in the validator, the function validateElement
internal OperationOutcome Validate(ScopedNavigator instance, IEnumerable <ElementDefinitionNavigator> definitions)
{
var outcome = new OperationOutcome();
try
{
List <ElementDefinitionNavigator> allDefinitions = new List <ElementDefinitionNavigator>(definitions);
if (allDefinitions.Count() == 1)
{
outcome.Add(validateElement(allDefinitions.Single(), instance));
}
else
{
var validators = allDefinitions.Select(nav => createValidator(nav, instance));
outcome.Add(this.Combine(BatchValidationMode.All, instance, validators));
}
}
catch (Exception e)
{
outcome.AddIssue($"Internal logic failure: {e.Message}", Issue.PROCESSING_CATASTROPHIC_FAILURE, instance);
}
return(outcome);
}
public override OperationOutcome Validate(Validator validator, ITypedElement errorLocation)
{
OperationOutcome outcome = new OperationOutcome();
foreach (var failure in _failures)
{
outcome.Add(failure);
}
outcome.Add(base.Validate(validator, errorLocation));
return(outcome);
}
internal static OperationOutcome ValidateChildConstraints(this Validator validator, ElementDefinitionNavigator definition,
ScopedNode instance, bool allowAdditionalChildren)
{
var outcome = new OperationOutcome();
if (!definition.HasChildren)
{
return(outcome);
}
validator.Trace(outcome, "Start validation of inlined child constraints for '{0}'".FormatWith(definition.Path), Issue.PROCESSING_PROGRESS, instance);
var matchResult = ChildNameMatcher.Match(definition, instance);
if (matchResult.UnmatchedInstanceElements.Any() && !allowAdditionalChildren)
{
var elementList = String.Join(",", matchResult.UnmatchedInstanceElements.Select(e => "'" + e.Name + "'"));
validator.Trace(outcome, $"Encountered unknown child elements {elementList} for definition '{definition.Path}'",
Issue.CONTENT_ELEMENT_HAS_UNKNOWN_CHILDREN, instance);
}
//TODO: Give warnings for out-of order children. Really? That's an xml artifact, no such thing in Json!
//(with the serializationrepresentationnav we could determine the source is xml and make order matter....)
// Recursively validate my children
foreach (var match in matchResult.Matches)
{
outcome.Add(validator.ValidateMatch(match, instance));
}
return(outcome);
}
internal static OperationOutcome ValidateMinMaxValue(this Validator validator, ElementDefinition definition, ITypedElement instance)
{
var outcome = new OperationOutcome();
if (definition.MinValue != null)
{
outcome.Add(validateMinMaxValue(validator, definition.MinValue, instance, -1, "MinValue"));
}
if (definition.MaxValue != null)
{
outcome.Add(validateMinMaxValue(validator, definition.MaxValue, instance, 1, "MaxValue"));
}
return(outcome);
}
private static OperationOutcome ValidateMatch(this Validator validator, Match match, IElementNavigator parent)
{
var outcome = new OperationOutcome();
var definition = match.Definition.Current;
if (definition.Min == null)
{
validator.Trace(outcome, $"Element definition does not specify a 'min' value, which is required. Cardinality has not been validated",
Issue.PROFILE_ELEMENTDEF_CARDINALITY_MISSING, parent);
}
else if (definition.Max == null)
{
validator.Trace(outcome, $"Element definition does not specify a 'max' value, which is required. Cardinality has not been validated",
Issue.PROFILE_ELEMENTDEF_CARDINALITY_MISSING, parent);
}
var cardinality = Cardinality.FromElementDefinition(definition);
var bucket = BucketFactory.CreateRoot(match.Definition, validator);
foreach (var element in match.InstanceElements)
{
var success = bucket.Add(element);
// For the "root" slice group (=the original core element that was sliced, not resliced)
// any element that does not match is an error
// Since the ChildNameMatcher currently does the matching, this will never go wrong
}
outcome.Add(bucket.Validate(validator, parent));
return(outcome);
}
/// <summary>
/// Generate snapshots for all StructureDefinitions available to the preprocessor
/// </summary>
/// <returns></returns>
public static OperationOutcome GenerateSnapshots(IEnumerable <StructureDefinition> sds, Func <StructureDefinition, OperationOutcome> snapshotGenerator, string path)
{
var outcome = new OperationOutcome();
foreach (var sd in sds)
{
if (!sd.HasSnapshot)
{
try
{
var snapshotOutcome = snapshotGenerator(sd);
if (!snapshotOutcome.Success)
{
outcome.AddIssue($"Snapshot generation failed for '{sd.Url}'. Details follow below.",
Issue.UNAVAILABLE_SNAPSHOT_GENERATION_FAILED, path);
outcome.Add(snapshotOutcome);
}
}
catch (Exception e)
{
outcome.AddIssue($"Snapshot generation failed for '{sd.Url}'. Message: {e.Message}",
Issue.UNAVAILABLE_SNAPSHOT_GENERATION_FAILED, path);
}
}
if (!sd.HasSnapshot)
{
outcome.AddIssue($"Profile '{sd.Url}' does not include a snapshot.", Issue.UNAVAILABLE_NEED_SNAPSHOT, path);
}
}
return(outcome);
}
public OperationOutcome Process()
{
var outcome = new OperationOutcome();
// Start preprocessing by resolving the references to the profiles (if any)
var resolveOutcome = _profiles.Resolve();
outcome.Add(resolveOutcome);
if (resolveOutcome.Success)
{
// Then, validate consistency of the profile assertions
var validationOutcome = _profiles.Validate();
outcome.Add(validationOutcome);
if (validationOutcome.Success)
{
if (_profiles.MinimalProfiles.Any())
{
// Then, generate snapshots for all sds that we have found
var genSnapshotOutcome = GenerateSnapshots(_profiles.MinimalProfiles, _snapshotGenerator, _path);
outcome.Add(genSnapshotOutcome);
if (genSnapshotOutcome.Success)
{
// Finally, return navigators to the definitions
Result = CreateNavigators(_profiles.MinimalProfiles);
}
}
else
{
outcome.AddIssue("There are no profile and type assertions at this point in the instance, so validation cannot succeed",
Issue.PROFILE_NO_PROFILE_TO_VALIDATE_AGAINST, _path);
}
}
}
return(outcome);
}
private static OperationOutcome ValidateMatch(this Validator validator, Match match, ScopedNode parent)
{
var outcome = new OperationOutcome();
var definition = match.Definition.Current;
if (definition.Min == null)
{
validator.Trace(outcome, $"Element definition does not specify a 'min' value, which is required. Cardinality has not been validated",
Issue.PROFILE_ELEMENTDEF_CARDINALITY_MISSING, parent);
}
else if (definition.Max == null)
{
validator.Trace(outcome, $"Element definition does not specify a 'max' value, which is required. Cardinality has not been validated",
Issue.PROFILE_ELEMENTDEF_CARDINALITY_MISSING, parent);
}
var cardinality = Cardinality.FromElementDefinition(definition);
IBucket bucket;
try
{
bucket = BucketFactory.CreateRoot(match.Definition, validator);
}
catch (NotImplementedException ni)
{
// Will throw if a non-supported slice type is encountered
validator.Trace(outcome, ni.Message, Issue.UNSUPPORTED_SLICING_NOT_SUPPORTED, parent);
return(outcome);
}
foreach (var element in match.InstanceElements)
{
var success = bucket.Add(element);
// For the "root" slice group (=the original core element that was sliced, not resliced)
// any element that does not match is an error
// Since the ChildNameMatcher currently does the matching, this will never go wrong
}
outcome.Add(bucket.Validate(validator, parent));
return(outcome);
}
internal static OperationOutcome ValidatedParseXml(this Validator me, XmlReader instance, out Resource poco)
{
var result = new OperationOutcome();
try
{
if (me.Settings.EnableXsdValidation)
{
var doc = XDocument.Load(instance, LoadOptions.SetLineInfo);
result.Add(me.ValidateXml(doc));
instance = doc.CreateReader();
}
poco = (Resource)(new FhirXmlParser()).Parse(instance, typeof(Resource));
}
catch (Exception e)
{
result.AddIssue($"Parsing of Xml into a FHIR Poco failed: {e.Message}", Issue.XSD_CONTENT_POCO_PARSING_FAILED, (string)null);
poco = null;
}
return(result);
}
private OperationOutcome validateCodeVS(ValueSet vs, CodeableConcept cc, bool?abstractAllowed)
{
var outcome = new OperationOutcome();
// Maybe just a text, but if there are no codings, that's a positive result
if (!cc.Coding.Any())
{
return(outcome);
}
// If we have just 1 coding, we better handle this using the simpler version of ValidateBinding
if (cc.Coding.Count == 1)
{
return(validateCodeVS(vs, cc.Coding.Single(), abstractAllowed));
}
// Else, look for one succesful match in any of the codes in the CodeableConcept
var callResults = cc.Coding.Select(coding => validateCodeVS(vs, coding, abstractAllowed));
var successOutcome = callResults.Where(r => r.Success).OrderBy(oo => oo.Warnings).FirstOrDefault();
if (successOutcome == null)
{
outcome.AddIssue("None of the Codings in the CodeableConcept were valid for the binding. Details follow.", Issue.CONTENT_INVALID_FOR_REQUIRED_BINDING);
foreach (var cr in callResults)
{
cr.MakeInformational();
outcome.Include(cr);
}
}
else
{
outcome.Add(successOutcome);
}
return(outcome);
}
/// <summary>
/// Validates the instance, declared and stated profiles for consistenty.
/// </summary>
/// <returns></returns>
public OperationOutcome Validate()
{
if (_lastValidationOutcome != null)
{
return(_lastValidationOutcome);
}
var outcome = new OperationOutcome();
// Resolve input profiles first (note: this is cached)
var resolutionOutcome = Resolve();
if (!resolutionOutcome.Success)
{
return(resolutionOutcome);
}
else
{
outcome.Add(resolutionOutcome);
}
// If we have an instance type, it should be compatible with the declared type on the definition and the stated profiles
if (InstanceType != null)
{
if (DeclaredType != null)
{
if (!ModelInfo.IsInstanceTypeFor(DeclaredType.BaseType(), InstanceType.BaseType()))
{
outcome.AddIssue($"The declared type of the element ({DeclaredType.ReadableName()}) is incompatible with that of the instance ('{InstanceType.ReadableName()}')",
Issue.CONTENT_ELEMENT_HAS_INCORRECT_TYPE, _path);
}
}
foreach (var type in StatedProfiles)
{
if (!ModelInfo.IsInstanceTypeFor(type.BaseType(), InstanceType.BaseType()))
{
outcome.AddIssue($"Instance of type '{InstanceType.ReadableName()}' is incompatible with the stated profile '{type.Url}' which is constraining constrained type '{type.ReadableName()}'",
Issue.CONTENT_ELEMENT_HAS_INCORRECT_TYPE, _path);
}
}
}
// All stated profiles should be profiling the same core type
if (StatedProfiles.Any())
{
var baseTypes = StatedProfiles.Select(p => p.BaseType()).Distinct().ToList();
if (baseTypes.Count > 1)
{
var combinedNames = String.Join(" and ", baseTypes.Select(bt => bt.GetLiteral()));
outcome.AddIssue($"The stated profiles are constraints on multiple different core types ({combinedNames}), which can never be satisfied.",
Issue.CONTENT_MISMATCHING_PROFILES, _path);
}
else
{
// The stated profiles should be compatible with the declared type of the element
if (DeclaredType != null)
{
if (!ModelInfo.IsInstanceTypeFor(DeclaredType.BaseType(), baseTypes.Single()))
{
outcome.AddIssue($"The stated profiles are all constraints on '{baseTypes.Single()}', which is incompatible with the declared type '{DeclaredType.ReadableName()}' of the element",
Issue.CONTENT_MISMATCHING_PROFILES, _path);
}
}
}
}
_lastValidationOutcome = outcome;
return(outcome);
}
// private OperationOutcome validateElement(ElementDefinitionNavigator definition, IElementNavigator instance)
private OperationOutcome validateElement(ElementDefinitionNavigator definition, ScopedNavigator instance)
{
var outcome = new OperationOutcome();
Trace(outcome, $"Start validation of ElementDefinition at path '{definition.QualifiedDefinitionPath()}'", Issue.PROCESSING_PROGRESS, instance);
// If navigator cannot be moved to content, there's really nothing to validate against.
if (definition.AtRoot && !definition.MoveToFirstChild())
{
outcome.AddIssue($"Snapshot component of profile '{definition.StructureDefinition?.Url}' has no content.", Issue.PROFILE_ELEMENTDEF_IS_EMPTY, instance);
return(outcome);
}
// Any node must either have a value, or children, or both (e.g. extensions on primitives)
if (instance.Value == null && !instance.HasChildren())
{
outcome.AddIssue("Element must not be empty", Issue.CONTENT_ELEMENT_MUST_HAVE_VALUE_OR_CHILDREN, instance);
return(outcome);
}
var elementConstraints = definition.Current;
if (elementConstraints.IsPrimitiveValueConstraint())
{
// The "value" property of a FHIR Primitive is the bottom of our recursion chain, it does not have a nameReference
// nor a <type>, the only thing left to do to validate the content is to validate the string representation of the
// primitive against the regex given in the core definition
outcome.Add(VerifyPrimitiveContents(elementConstraints, instance));
}
else
{
bool isInlineChildren = !definition.Current.IsRootElement();
// Now, validate the children
if (definition.HasChildren)
{
// If we are at the root of an abstract type (e.g. is this instance a Resource)?
// or we are at a nested resource, we may expect more children in the instance than
// we know about
bool allowAdditionalChildren = (isInlineChildren && elementConstraints.IsResourcePlaceholder()) ||
(!isInlineChildren && definition.StructureDefinition.Abstract == true);
// Handle in-lined constraints on children. In a snapshot, these children should be exhaustive,
// so there's no point in also validating the <type> or <nameReference>
// TODO: Check whether this is even true when the <type> has a profile?
// Note: the snapshot is *not* exhaustive if the declared type is a base FHIR type (like Resource),
// in which case there may be additional children (verified in the next step)
outcome.Add(this.ValidateChildConstraints(definition, instance, allowAdditionalChildren: allowAdditionalChildren));
// Special case: if we are located at a nested resource (i.e. contained or Bundle.entry.resource),
// we need to validate based on the actual type of the instance
if (isInlineChildren && elementConstraints.IsResourcePlaceholder())
{
outcome.Add(this.ValidateType(elementConstraints, instance));
}
}
if (!definition.HasChildren)
{
// No inline-children, so validation depends on the presence of a <type> or <nameReference>
if (elementConstraints.Type != null || elementConstraints.NameReference != null)
{
outcome.Add(this.ValidateType(elementConstraints, instance));
outcome.Add(ValidateNameReference(elementConstraints, definition, instance));
}
else
{
Trace(outcome, "ElementDefinition has no child, nor does it specify a type or nameReference to validate the instance data against", Issue.PROFILE_ELEMENTDEF_CONTAINS_NO_TYPE_OR_NAMEREF, instance);
}
}
}
outcome.Add(this.ValidateFixed(elementConstraints, instance));
outcome.Add(this.ValidatePattern(elementConstraints, instance));
outcome.Add(this.ValidateMinMaxValue(elementConstraints, instance));
outcome.Add(ValidateMaxLength(elementConstraints, instance));
outcome.Add(this.ValidateFp(elementConstraints, instance));
outcome.Add(this.ValidateBinding(elementConstraints, instance));
outcome.Add(this.ValidateExtension(elementConstraints, instance, "http://hl7.org/fhir/StructureDefinition/regex"));
// If the report only has partial information, no use to show the hierarchy, so flatten it.
if (Settings.Trace == false)
{
outcome.Flatten();
}
return(outcome);
}
// private OperationOutcome validateElement(ElementDefinitionNavigator definition, IElementNavigator instance)
private OperationOutcome validateElement(ElementDefinitionNavigator definition, IElementNavigator instance)
{
var outcome = new OperationOutcome();
try
{
Trace(outcome, $"Start validation of ElementDefinition at path '{definition.QualifiedDefinitionPath()}'", Issue.PROCESSING_PROGRESS, instance);
ScopeTracker.Enter(instance);
// If navigator cannot be moved to content, there's really nothing to validate against.
if (definition.AtRoot && !definition.MoveToFirstChild())
{
outcome.AddIssue($"Snapshot component of profile '{definition.StructureDefinition?.Url}' has no content.", Issue.PROFILE_ELEMENTDEF_IS_EMPTY, instance);
return(outcome);
}
// Any node must either have a value, or children, or both (e.g. extensions on primitives)
if (instance.Value == null && !instance.HasChildren())
{
outcome.AddIssue("Element must not be empty", Issue.CONTENT_ELEMENT_MUST_HAVE_VALUE_OR_CHILDREN, instance);
return(outcome);
}
var elementConstraints = definition.Current;
if (elementConstraints.IsPrimitiveValueConstraint())
{
// The "value" property of a FHIR Primitive is the bottom of our recursion chain, it does not have a nameReference
// nor a <type>, the only thing left to do to validate the content is to validate the string representation of the
// primitive against the regex given in the core definition
outcome.Add(VerifyPrimitiveContents(elementConstraints, instance));
}
else if (definition.HasChildren)
{
// Handle in-lined constraints on children. In a snapshot, these children should be exhaustive,
// so there's no point in also validating the <type> or <nameReference>
// TODO: Check whether this is even true when the <type> has a profile?
outcome.Add(this.ValidateChildConstraints(definition, instance));
}
else
{
// No inline-children, so validation depends on the presence of a <type> or <nameReference>
if (elementConstraints.Type != null || elementConstraints.NameReference != null)
{
outcome.Add(this.ValidateType(elementConstraints, instance));
outcome.Add(ValidateNameReference(elementConstraints, definition, instance));
}
else
{
Trace(outcome, "ElementDefinition has no child, nor does it specify a type or nameReference to validate the instance data against", Issue.PROFILE_ELEMENTDEF_CONTAINS_NO_TYPE_OR_NAMEREF, instance);
}
}
outcome.Add(this.ValidateFixed(elementConstraints, instance));
outcome.Add(this.ValidatePattern(elementConstraints, instance));
outcome.Add(this.ValidateMinMaxValue(elementConstraints, instance));
outcome.Add(ValidateMaxLength(elementConstraints, instance));
outcome.Add(ValidateConstraints(elementConstraints, instance));
outcome.Add(this.ValidateBinding(elementConstraints, instance));
// If the report only has partial information, no use to show the hierarchy, so flatten it.
if (Settings.Trace == false)
{
outcome.Flatten();
}
return(outcome);
}
finally
{
ScopeTracker.Leave(instance);
}
}