public static void Main()
{
modshogun.init_shogun_with_defaults();
int size_cache = 3;
int k = 1;
double width = 10;
String[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
String[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures feats_train = new StringCharFeatures(fm_train_dna, EAlphabet.DNA);
StringCharFeatures feats_test = new StringCharFeatures(fm_test_dna, EAlphabet.DNA);
OligoStringKernel kernel = new OligoStringKernel(size_cache, k, width);
kernel.init(feats_train, feats_train);
double[,] km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
double[,] km_test = kernel.get_kernel_matrix();
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
int size_cache = 3;
int k = 1;
double width = 10;
String[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
String[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures feats_train = new StringCharFeatures(fm_train_dna, EAlphabet.DNA);
StringCharFeatures feats_test = new StringCharFeatures(fm_test_dna, EAlphabet.DNA);
OligoStringKernel kernel = new OligoStringKernel(size_cache, k, width);
kernel.init(feats_train, feats_train);
double[,] km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
double[,] km_test = kernel.get_kernel_matrix();
}
internal static HandleRef getCPtr(OligoStringKernel obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
internal static HandleRef getCPtr(OligoStringKernel obj) {
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
