private void GenerateNormalizedPeptideWeights()
{
NormalizedPeptideWeights.Clear();
NormalizedWildtypeWeights.Clear();
NormalizedMatrixMin = double.MaxValue;
NormalizedMatrixMax = double.MinValue;
for (int iRow = 0; iRow < RowCount; iRow++)
{
for (int iCol = 0; iCol < ColCount; iCol++)
{
int pos = PermutationXAxis ? iRow : iCol;
double normby = NormMode == NormalizationMode.Mean ? NormalizationValue :
NormBy == null ? 1 : NormBy[pos];
if (normby != 0)
{
NormalizedMatrix[iRow, iCol] = QuantificationMatrix[iRow, iCol] / normby;
}
if (NormalizedMatrix[iRow, iCol] < NormalizedMatrixMin)
{
NormalizedMatrixMin = NormalizedMatrix[iRow, iCol];
}
if (NormalizedMatrix[iRow, iCol] > NormalizedMatrixMax)
{
NormalizedMatrixMax = NormalizedMatrix[iRow, iCol];
}
AddNormalizedPeptideWeight(PeptideMatrix[iRow, iCol], pos, NormalizedMatrix[iRow, iCol]);
}
}
}
private void AddNormalizedPeptideWeight(string peptide, int pos, double weight)
{
if (string.IsNullOrEmpty(peptide))
{
return;
}
if (peptide == WildTypePeptide)
{
NormalizedWildtypeWeights.Add(pos, weight);
return;
}
if (!NormalizedPeptideWeights.ContainsKey(peptide))
{
NormalizedPeptideWeights.Add(peptide, weight);
}
}
