public void TestMsAlignRescoring()
{
var methodName = MethodBase.GetCurrentMethod().Name;
TestUtils.ShowStarting(methodName);
const string specFilePath = @"\\proto-2\UnitTest_Files\InformedProteomics_TestFiles\SpecFiles\QC_ShewIntact_2ug_3k_CID_4Apr14_Bane_PL011402.raw";
const string msAlignResultPath = @"C:\cygwin\home\kims336\Data\TopDownQCShew\MSAlign\NoMod.tsv";
const string outputPath = @"C:\cygwin\home\kims336\Data\TopDownQCShew\MSAlign\NoMod_Rescored.tsv";
if (!File.Exists(specFilePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, specFilePath);
}
if (!File.Exists(msAlignResultPath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, msAlignResultPath);
}
var tolerance = new Tolerance(10.0);
var rescorer = new MsAlignRescorer(specFilePath, msAlignResultPath, outputPath, tolerance, 0.7, 1, 15);
Console.WriteLine("Done");
}
public void TestMsAlignRescoring()
{
var methodName = MethodBase.GetCurrentMethod().Name;
Utils.ShowStarting(methodName);
var specFilePath = Path.Combine(Utils.DEFAULT_SPEC_FILES_FOLDER, "QC_ShewIntact_2ug_3k_CID_4Apr14_Bane_PL011402.raw");
const string msAlignResultPath = @"C:\cygwin\home\kims336\Data\TopDownQCShew\MSAlign\NoMod.tsv";
const string outputPath = @"C:\cygwin\home\kims336\Data\TopDownQCShew\MSAlign\NoMod_Rescored.tsv";
if (!File.Exists(specFilePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, specFilePath);
}
if (!File.Exists(msAlignResultPath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, msAlignResultPath);
}
var tolerance = new Tolerance(10.0);
var rescorer = new MsAlignRescorer(specFilePath, msAlignResultPath, outputPath, tolerance, 0.7, 1, 15);
Console.WriteLine("Done");
}
