/// <summary>
/// Gets the modification array.
/// </summary>
/// <param name="modifications">The modifications.</param>
/// <returns></returns>
/// <exception cref="ArgumentNullException">modifications</exception>
protected void SetupModificationArray(IEnumerable <T> modifications)
{
if (modifications == null)
{
throw new ArgumentNullException(nameof(modifications));
}
var modArray = new IProteoformMassDelta[10000]; // More IDs than will ever exist
int maxId = -1;
foreach (T modification in modifications)
{
IChemicalFormula?chemicalFormula = this.GetChemicalFormula(modification);
int id = Convert.ToInt32(this.RemovePrefix(modification.Id));
if (chemicalFormula != null)
{
modArray[id] = new ModificationWrapper(modification, chemicalFormula);
}
// Keep all the way up to the max passed in, even if it turns out to be NULL
maxId = Math.Max(maxId, id);
}
Array.Resize(ref modArray, maxId + 1);
_modifications = modArray;
}
/// <summary>
/// Gets the modification array.
/// </summary>
/// <param name="modifications">The modifications.</param>
/// <returns></returns>
/// <exception cref="ArgumentNullException">modifications</exception>
protected void SetupModificationArray(IEnumerable <T> modifications)
{
if (modifications == null)
{
throw new ArgumentNullException(nameof(modifications));
}
_modificationNames = new Dictionary <string, IProteoformMassDelta>();
var modArray = new IProteoformMassDelta[10000]; // More IDs than will ever exist
int maxId = -1;
foreach (T modification in modifications)
{
IChemicalFormula?chemicalFormula = this.GetChemicalFormula(modification);
int id = Convert.ToInt32(this.RemovePrefix(modification.Id));
if (chemicalFormula != null)
{
modArray[id] = new ModificationWrapper(modification, chemicalFormula);
}
// Keep all the way up to the max passed in, even if it turns out to be NULL
maxId = Math.Max(maxId, id);
if (_modificationNames != null)
{
// HACK for obsolete PSI-MOD terms with same name as something else ... skip
if (modification.Id == "MOD:00949" || modification.Id == "MOD:01966")
{
continue;
}
_modificationNames.Add(modification.Name, modArray[id]);
}
}
Array.Resize(ref modArray, maxId + 1);
_modifications = modArray;
}