static void Main(string[] argv)
{
modshogun.init_shogun_with_defaults();
int degree = 20;
double scale = 1.4;
int size_cache = 10;
int order = 3;
int gap = 0;
bool reverse = false;
string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
string[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, DNA);
StringWordFeatures feats_train = new StringWordFeatures(DNA);
feats_train.obtain_from_char(charfeat, order-1, order, gap, reverse);
StringCharFeatures charfeat_test = new StringCharFeatures(fm_test_dna, DNA);
StringWordFeatures feats_test = new StringWordFeatures(DNA);
feats_test.obtain_from_char(charfeat_test, order-1, order, gap, reverse);
MatchWordStringKernel kernel = new MatchWordStringKernel(size_cache, degree);
kernel.set_normalizer(new AvgDiagKernelNormalizer(scale));
kernel.init(feats_train, feats_train);
DoubleMatrix km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
DoubleMatrix km_test = kernel.get_kernel_matrix();
modshogun.exit_shogun();
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
int degree = 20;
double scale = 1.4;
int size_cache = 10;
int order = 3;
int gap = 0;
bool reverse = false;
String[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
String[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, EAlphabet.DNA);
StringWordFeatures feats_train = new StringWordFeatures(EAlphabet.DNA);
feats_train.obtain_from_char(charfeat, order - 1, order, gap, reverse);
StringCharFeatures charfeat_test = new StringCharFeatures(fm_test_dna, EAlphabet.DNA);
StringWordFeatures feats_test = new StringWordFeatures(EAlphabet.DNA);
feats_test.obtain_from_char(charfeat_test, order - 1, order, gap, reverse);
MatchWordStringKernel kernel = new MatchWordStringKernel(size_cache, degree);
kernel.set_normalizer(new AvgDiagKernelNormalizer(scale));
kernel.init(feats_train, feats_train);
double[,] km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
double[,] km_test = kernel.get_kernel_matrix();
modshogun.exit_shogun();
}
internal static HandleRef getCPtr(MatchWordStringKernel obj) {
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
internal static HandleRef getCPtr(MatchWordStringKernel obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
