private void LoadPeakScoreTable(StreamReader reader, double[][][] table)
{
var binLen = table[0][0].Length;
while (true)
{
var line = reader.ReadLine();
if (string.IsNullOrEmpty(line))
{
break;
}
var tokens = line.Split(',');
if (tokens.Length != 2)
{
break;
}
var c = GetChargeIndex(int.Parse(tokens[0]));
var m = MassBinning.GetBinIndex(double.Parse(tokens[1]));
line = reader.ReadLine();
var token = line.Split('\t');
for (var j = 0; j < binLen; j++)
{
table[c][m][j] = GetBoundedLkScore(token[j]);
}
}
}
private void LoadChargeScoreTable(StreamReader reader)
{
while (true)
{
var line = reader.ReadLine();
if (string.IsNullOrEmpty(line))
{
break;
}
//var tokens = line.Split(',');
var m = MassBinning.GetBinIndex(double.Parse(line));
line = reader.ReadLine();
var token = line.Split('\t');
for (var j = 0; j < ChargeBinLength; j++)
{
ChargeScoreTable[m][j] = GetBoundedLkScore(token[j]);
}
}
}
public double GetNodeScoreWithoutMassError(ActivationMethod activationMethod, bool isPrefix, double fragmentIonMass, int fragmentIonCharge,
double corrScore, double distScore, double intensityScore)
{
var m = MassBinning.GetBinIndex(fragmentIonMass);
var c = GetChargeIndex(fragmentIonCharge);
var a = GetActivationMethodIndex(activationMethod);
var t = GetIonTypeIndex(isPrefix);
var ci = CorrBinning.GetBinIndex(corrScore);
var di = DistBinning.GetBinIndex(distScore);
var ii = IntensityBinning.GetBinIndex(intensityScore);
var score = IonTypeScoreTable[a][t];
score += MassScoreTable[a][t][m];
score += ChargeScoreTable[m][c];
score += CorrScoreTable[c][m][ci];
score += DistScoreTable[c][m][di];
score += IntensityScoreTable[c][m][ii];
return(score);
}