public MarkerGen1Summary( MarkerEvidence sameGeneration, MarkerEvidence shareBiomom, MarkerEvidence shareBiodad, MarkerEvidence shareBiograndparent )
{
_sameGeneration = sameGeneration;
_shareBiomom = shareBiomom;
_shareBiodad = shareBiodad;
_shareBiograndparent = shareBiograndparent;
}
public static Tristate TranslateEvidenceToTristate( MarkerEvidence source1, MarkerEvidence source2 )
{
if ( _green.Contains(source1) && _green.Contains(source2) ) return Tristate.Yes;
else if ( _red.Contains(source1) && _red.Contains(source2) ) return Tristate.No;
else if ( _yellow.Contains(source1) ) return TranslateEvidenceToTristate(source2);
else if ( _yellow.Contains(source2) ) return TranslateEvidenceToTristate(source1);
else if ( (_green.Contains(source1) && _red.Contains(source2)) || (_green.Contains(source2) && _red.Contains(source1)) ) return Tristate.DoNotKnow;
else throw new ArgumentOutOfRangeException("The 'TranslateEvidenceToTristate' function was not designed to accommodate these two values of MarkerEvidence.");
}
public static Tristate TranslateEvidenceToTristate( MarkerEvidence evidence )
{
switch ( evidence ) {
case MarkerEvidence.StronglySupports:
case MarkerEvidence.Supports:
return Tristate.Yes;
case MarkerEvidence.Consistent:
case MarkerEvidence.Ambiguous:
case MarkerEvidence.Irrelevant:
case MarkerEvidence.Missing:
return Tristate.DoNotKnow;
case MarkerEvidence.Unlikely:
case MarkerEvidence.Disconfirms:
return Tristate.No;
default:
throw new ArgumentOutOfRangeException("evidence", evidence, "This function does not support this value of MarkerEvidence.");
}
}
private void AddMarkerRow( Int16 extendedID, Int32 relatedID, MarkerType markerType, Int16 surveyYear, MarkerEvidence mzEvidence, MarkerEvidence sameGenerationEvidence, MarkerEvidence biomomEvidence, MarkerEvidence biodadEvidence, MarkerEvidence biograndparentEvidence )
{
LinksDataSet.tblMarkerGen1Row drNew = _dsLinks.tblMarkerGen1.NewtblMarkerGen1Row();
drNew.ExtendedID = extendedID;
drNew.RelatedID = relatedID;
drNew.MarkerType = Convert.ToByte(markerType);
drNew.SurveyYear = surveyYear;
drNew.MzEvidence = Convert.ToByte(mzEvidence);
drNew.SameGeneration = Convert.ToByte(sameGenerationEvidence);
drNew.ShareBiomomEvidence = Convert.ToByte(biomomEvidence);
drNew.ShareBiodadEvidence = Convert.ToByte(biodadEvidence);
drNew.ShareBioGrandparentEvidence = Convert.ToByte(biograndparentEvidence);
_dsLinks.tblMarkerGen1.AddtblMarkerGen1Row(drNew);
}
private Tristate ImplicitShareBioparent( MarkerEvidence inHH1979, MarkerEvidence deathAge )
{
if ( deathAge == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if ( inHH1979 == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if ( deathAge == MarkerEvidence.Disconfirms )
return Tristate.No;
else if ( inHH1979 == MarkerEvidence.Disconfirms )
return Tristate.No;
else
return Tristate.DoNotKnow;
}
private float? CalculateRExplicitSingleSibVersion( MarkerEvidence biomom, MarkerEvidence biodad )
{
if ( biomom == MarkerEvidence.Missing || biodad == MarkerEvidence.Missing ) {
return null;
}
else if ( biomom == MarkerEvidence.Supports && biodad == MarkerEvidence.Supports ) { //if ( !OverridesGen1.RosterAndExplicit.Contains(subjectTag) ) { // Trace.Assert(roster.ShareBiomom != MarkerEvidence.Disconfirms); // Trace.Assert(roster.ShareBiodad != MarkerEvidence.Disconfirms);//}
return RCoefficients.SiblingFull;
}
else if ( biomom == MarkerEvidence.Disconfirms && biodad == MarkerEvidence.Supports ) {//Trace.Assert(roster.ShareBiomom != MarkerEvidence.Disconfirms); //Trace.Assert(roster.ShareBiodad != MarkerEvidence.Disconfirms);
return RCoefficients.SiblingHalf;
}
else if ( biomom == MarkerEvidence.Supports && biodad == MarkerEvidence.Disconfirms ) { //if ( !OverridesGen1.RosterAndExplicit.Contains(subjectTag) ) { // Trace.Assert(roster.ShareBiomom != MarkerEvidence.Disconfirms);// Trace.Assert(roster.ShareBiodad != MarkerEvidence.Disconfirms); //}
return RCoefficients.SiblingHalf;
}
//else if ( biomom.ShareBiomom == MarkerEvidence.Disconfirms && biodad.ShareBiodad == MarkerEvidence.Disconfirms ) {
// return RCoefficients.NotRelated;//The could still be cousins or something else
//}
else {
return null; //The could still be cousins or something else
}
}
private Int32 AddMarkerRow( Int16 extendedID, Int32 relatedID, MarkerType markerType, Int16? surveyYear, MarkerEvidence mzEvidence, MarkerEvidence biodadEvidence, bool fromMother )
{
lock ( _dsLinks.tblMarkerGen2 ) {
//if ( !surveyYear.HasValue ) return 0;
LinksDataSet.tblMarkerGen2Row drNew = _dsLinks.tblMarkerGen2.NewtblMarkerGen2Row();
drNew.ExtendedID = extendedID;
drNew.RelatedID = relatedID;
drNew.MarkerType = (byte)markerType;
if ( surveyYear.HasValue ) drNew.SurveyYear = surveyYear.Value;
else drNew.SetSurveyYearNull();
drNew.MzEvidence = (byte)mzEvidence;
drNew.ShareBiodadEvidence = (byte)biodadEvidence;
drNew.FromMother = fromMother;
_dsLinks.tblMarkerGen2.AddtblMarkerGen2Row(drNew);
}
return 1;
}
private float? CalculateRImplicitMother( MarkerEvidence babyDaddyDeathDate, MarkerEvidence babyDaddyAlive, MarkerEvidence babyDaddyInHH, MarkerEvidence babyDaddyLeftHHDate, MarkerEvidence babyDaddyDistanceFromHH )
{
if ( !_drValue.IsRImplicitPass1Null() ) return (float?)_drValue.RImplicitPass1;
DataColumn dcPass1 = _dsLinks.tblRelatedValues.RImplicitPass1Column;
PairR[] pairs = PairR.BuildRelatedPairsOfGen2Sibs(dcPass1, _drLeft.SubjectTag_S1, _drLeft.SubjectTag_S2, _drLeft.ExtendedID, _dsLinks);
InterpolateR interpolate = new InterpolateR(pairs);
float? newRImplicit = interpolate.Interpolate(_drLeft.SubjectTag_S1, _drLeft.SubjectTag_S2);
if ( newRImplicit.HasValue ) {
return newRImplicit;
}
else {
if ( babyDaddyDeathDate == MarkerEvidence.Supports ) return RCoefficients.SiblingFull;
else if ( babyDaddyDeathDate == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( babyDaddyInHH == MarkerEvidence.Supports ) return RCoefficients.SiblingFull;
else if ( babyDaddyInHH == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( babyDaddyLeftHHDate == MarkerEvidence.Supports ) return RCoefficients.SiblingFull;
else if ( babyDaddyLeftHHDate == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( babyDaddyAlive == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( babyDaddyDistanceFromHH == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( HasLargeMetaphoricalDistance(pairs) ) return RCoefficients.SiblingHalf;
else return null;
}
}
private float? CalculateRImplicitSubject( MarkerEvidence fatherAlive, MarkerEvidence fatherInHH, MarkerEvidence fatherDistanceFromHH )
{
//else if ( babyDaddyDeathDate == MarkerEvidence.StronglySupports ) return RCoefficientsSibling.SiblingFull;
//else if ( babyDaddyDeathDate == MarkerEvidence.Disconfirms ) return RCoefficientsSibling.SiblingHalf;
if ( fatherAlive == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
//else if ( babyDaddyLeftHHDate == MarkerEvidence.StronglySupports ) return RCoefficientsSibling.SiblingFull;
//else if ( babyDaddyLeftHHDate == MarkerEvidence.Disconfirms ) return RCoefficientsSibling.SiblingHalf;
else if ( fatherInHH == MarkerEvidence.StronglySupports ) return RCoefficients.SiblingFull;
else if ( fatherInHH == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( fatherDistanceFromHH == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
//else if ( babyDaddyAsthma == MarkerEvidence.Disconfirms ) return RCoefficientsSibling.SiblingHalf;
//if ( babyDaddyDeathDate == MarkerEvidence.Supports ) return RCoefficientsSibling.SiblingFull;
//else if ( babyDaddyDeathDate == MarkerEvidence.Unlikely ) return RCoefficientsSibling.SiblingHalf;
else if ( fatherInHH == MarkerEvidence.Supports ) return RCoefficients.SiblingFull;
else if ( fatherInHH == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
//else if ( babyDaddyLeftHHDate == MarkerEvidence.Supports ) return RCoefficientsSibling.SiblingFull;
//else if ( babyDaddyLeftHHDate == MarkerEvidence.Unlikely ) return RCoefficientsSibling.SiblingHalf;
else if ( fatherAlive == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
else if ( fatherDistanceFromHH == MarkerEvidence.Unlikely ) return RCoefficients.SiblingHalf;
//else if ( HasLargeMetaphoricalDistance(pairs) ) return RCoefficientsSibling.SiblingHalf;
else return null;
}
public MarkerGen2Summary( Int16 surveyYear, MarkerEvidence mzEvidence, MarkerEvidence shareBiodad )
{
_surveyYear = surveyYear;
_mzEvidence = mzEvidence;
_shareBiodad = shareBiodad;
}
private float? CalculateRImplicitPass1( MarkerEvidence babyDaddyDeathDate, MarkerEvidence babyDaddyAlive, MarkerEvidence babyDaddyInHH, MarkerEvidence babyDaddyLeftHHDate,
MarkerEvidence babyDaddyDistanceFromHH, MarkerEvidence babyDaddyAsthma )
{
if ( IsMZ == BaseAssembly.Tristate.Yes ) return RCoefficients.MzTrue;
else if ( IsMZ == BaseAssembly.Tristate.DoNotKnow ) return RCoefficients.MzAmbiguous;
else if ( MultipleBirthIfSameSex == BaseAssembly.MultipleBirth.Twin ) return RCoefficients.SiblingFull;
else if ( MultipleBirthIfSameSex == BaseAssembly.MultipleBirth.Trip ) return RCoefficients.SiblingFull;
else if ( MultipleBirthIfSameSex == BaseAssembly.MultipleBirth.DoNotKnow ) throw new InvalidOperationException("There shouldn't be any 'MultipleBirth.DoNotKnow' relationships.");
else if ( babyDaddyDeathDate == MarkerEvidence.StronglySupports ) return RCoefficients.SiblingFull;
else if ( babyDaddyDeathDate == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( babyDaddyAlive == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( babyDaddyLeftHHDate == MarkerEvidence.StronglySupports ) return RCoefficients.SiblingFull;
else if ( babyDaddyLeftHHDate == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( babyDaddyInHH == MarkerEvidence.StronglySupports ) return RCoefficients.SiblingFull;
else if ( babyDaddyInHH == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( babyDaddyDistanceFromHH == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else if ( babyDaddyAsthma == MarkerEvidence.Disconfirms ) return RCoefficients.SiblingHalf;
else return null;
}
private Tristate ImplicitShareBioparent( MarkerEvidence alwaysWithBothBioparents, MarkerEvidence inHH1980, MarkerEvidence inHH1978, MarkerEvidence inHH1977, MarkerEvidence inHH1976, MarkerEvidence birthCountry, MarkerEvidence birthState,
MarkerEvidence birthYearAskedIn1988, MarkerEvidence birthYearAskedIn1987 )
{
if( inHH1980 == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if( inHH1980 == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( inHH1978 == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if( inHH1978 == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( inHH1977 == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if( inHH1977 == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( inHH1976 == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if( inHH1976 == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( birthCountry == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( birthState == MarkerEvidence.Disconfirms )
return Tristate.No;
else if( alwaysWithBothBioparents == MarkerEvidence.StronglySupports )
return Tristate.Yes;
else if( birthYearAskedIn1988 == MarkerEvidence.Disconfirms )
return Tristate.No;
//else if ( birthYearAskedIn1988 == MarkerEvidence.Supports )
// return Tristate.Yes;
else if( birthYearAskedIn1987 == MarkerEvidence.Disconfirms )
return Tristate.No;
//else if ( birthYearAskedIn1987 == MarkerEvidence.Supports )
// return Tristate.Yes;
//else if ( birthYearAskedIn1988 == MarkerEvidence.Unlikely )
// return Tristate.No;
//else if ( birthYearAskedIn1987 == MarkerEvidence.Unlikely )
// return Tristate.No;
else
return Tristate.DoNotKnow;
}
private void BiodadInHH( MarkerEvidence expected, TrendComparisonInteger comparison )
{
MarkerEvidence actual = DetermineShareBabyDaddy.InHH(comparison);
Assert.AreEqual(expected, actual, "The determination should be correct.");
}
private void Date( MarkerEvidence expected, ITrendComparison comparison )
{
MarkerEvidence actual = DetermineShareBabyDaddy.Date(comparison);
Assert.AreEqual(expected, actual, "The determination should be correct.");
}