private void UpdateSegment(ILookup <string, ChromosomeSegment> segmentMap, Kit kit)
{
var kitSegments = segmentMap[NormalizeName(kit.Name)];
if (!kitSegments.Any())
{
_logger.LogInfo($"Warning: No segments could be found for {kit.Name}, falling back to fetching details...");
var details = _service.GetMatchDetails(kit).Result;
kitSegments = details.FFCMData.Select(s => new ChromosomeSegment
{
Chromosome = s.Chromosome,
StartLocation = s.P1,
EndLocation = s.P2,
Centimorgans = s.Cm,
MatchingSnps = s.Snps
});
_logger.LogInfo($"Fetching {kitSegments.Count()} segments from details");
}
foreach (var kitSegment in kitSegments)
{
kit.AddSegmentMatch(kitSegment.Chromosome,
kitSegment.StartLocation,
kitSegment.EndLocation,
kitSegment.MatchingSnps);
}
}
public Kit ToUnconnectedKit()
{
Kit kit = ModelBuilder.BuildKit(this);
kit.LastUpdated = LastUpdated;
foreach (var segment in SegmentMatches)
{
kit.AddSegmentMatch(segment);
}
return(kit);
}