public void TestIsosFilter()
{
var methodName = MethodBase.GetCurrentMethod().Name;
TestUtils.ShowStarting(methodName);
const string isosFilePath = @"H:\Research\QCShew_TopDown\Production\ICRTools\QC_Shew_Intact_26Sep14_Bane_C2Column3_Isos.csv";
if (!File.Exists(isosFilePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, isosFilePath);
}
const string rawFilePath = @"H:\Research\QCShew_TopDown\Production\QC_Shew_Intact_26Sep14_Bane_C2Column3.raw";
if (!File.Exists(rawFilePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, rawFilePath);
}
var run = PbfLcMsRun.GetLcMsRun(rawFilePath);
var filter = new IsosFilter(run, new Tolerance(10), isosFilePath);
Console.WriteLine(string.Join("\t", filter.GetMatchingMs2ScanNums(30261.68374)));
}
public void TestIsosFilter()
{
var methodName = MethodBase.GetCurrentMethod().Name;
Utils.ShowStarting(methodName);
var isosFilePath = Path.Combine(Utils.DEFAULT_SPEC_FILES_FOLDER, "QC_Shew_Intact_26Sep14_Bane_C2Column3_Excerpt_isos.csv");
var isosfile = Utils.GetTestFile(methodName, isosFilePath);
var pbfFilePath = Utils.GetPbfTestFilePath(false);
var pbfFile = Utils.GetTestFile(methodName, pbfFilePath);
var run = PbfLcMsRun.GetLcMsRun(pbfFile.FullName);
var filter = new IsosFilter(run, new Tolerance(10), isosfile.FullName);
var massToFind = 944.08176;
var matchingScanNums = filter.GetMatchingMs2ScanNums(massToFind).ToList();
var scanNumList = string.Join(",", matchingScanNums);
Console.WriteLine("Scans with mass {0}:", massToFind);
Console.WriteLine(scanNumList);
}
