public override global::System.Data.DataSet Clone()
{
ImportDataSet cln = ((ImportDataSet)(base.Clone()));
cln.InitVars();
cln.SchemaSerializationMode = this.SchemaSerializationMode;
return(cln);
}
public static int?CreateNewClient(ImportData data)
{
try
{
ImportDataSet ds = new ImportDataSet();
ImportDataSetTableAdapters.ClientsTableAdapter tableAdapter = new ImportDataSetTableAdapters.ClientsTableAdapter();
string provinceId = "00"; // HACK Provincia hardcodeada
string countryId = "es"; // HACK Pais hardcodeado
var row = ds.Clients.NewClientsRow();
row.Code = "";
row.Name = data.ClientName;
row.Cif = data.ClientCif;
row.Address = data.Address;
row.City = data.City;
row.PostCode = data.PostCode;
row.Province = provinceId;
row.Country = countryId;
row.Contact = data.Contact;
row.Phone = data.Phone;
row.Phone2 = data.Phone2;
row.PhoneMobile = "";
row.Fax = "";
row.Email = data.Email;
string[] gps = Geocode(data.Address, data.PostCode, data.City);
row.Latitude = float.Parse(gps[0]);
row.Longitude = float.Parse(gps[1]);
ds.Clients.AddClientsRow(row);
tableAdapter.Update(ds.Clients);
int clientId = ds.Clients[0].Id;
ds.Clients[0].Code = clientId.ToString().PadLeft(8, '0');
tableAdapter.Update(ds.Clients);
CreateClientRelationship(data, clientId);
return(clientId);
}
catch (Exception)
{
return(null);
}
/*
* TODO Elementos que no se insertan
* Province
* Country
* PhoneMobile
* Fax
*/
}
public RelatedValues( ImportDataSet dsImport, LinksDataSet dsLinks )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( dsLinks.tblRelatedStructure.Count <= 0 ) throw new ArgumentException("There should NOT be zero rows in tblRelatedStructure.");
if ( dsLinks.tblMarkerGen1.Count <= 0 ) throw new ArgumentException("There should NOT be zero rows in tblMarkerGen1.");
if ( dsLinks.tblMarkerGen2.Count <= 0 ) throw new ArgumentException("There should NOT be zero rows in tblMarkerGen2.");
if ( dsLinks.vewSurveyTimeMostRecent.Count <= 0 ) throw new ArgumentException("There should NOT be zero rows in vewSurveyTimeMostRecent.");
if ( dsLinks.tblRelatedValues.Count != 0 ) throw new ArgumentException("There should be zero rows in tblRelatedValues.");
_dsImport = dsImport;
_dsLinks = dsLinks;
}
public static global::System.Xml.Schema.XmlSchemaComplexType GetTypedDataSetSchema(global::System.Xml.Schema.XmlSchemaSet xs)
{
ImportDataSet ds = new ImportDataSet();
global::System.Xml.Schema.XmlSchemaComplexType type = new global::System.Xml.Schema.XmlSchemaComplexType();
global::System.Xml.Schema.XmlSchemaSequence sequence = new global::System.Xml.Schema.XmlSchemaSequence();
global::System.Xml.Schema.XmlSchemaAny any = new global::System.Xml.Schema.XmlSchemaAny();
any.Namespace = ds.Namespace;
sequence.Items.Add(any);
type.Particle = sequence;
global::System.Xml.Schema.XmlSchema dsSchema = ds.GetSchemaSerializable();
if (xs.Contains(dsSchema.TargetNamespace))
{
global::System.IO.MemoryStream s1 = new global::System.IO.MemoryStream();
global::System.IO.MemoryStream s2 = new global::System.IO.MemoryStream();
try {
global::System.Xml.Schema.XmlSchema schema = null;
dsSchema.Write(s1);
for (global::System.Collections.IEnumerator schemas = xs.Schemas(dsSchema.TargetNamespace).GetEnumerator(); schemas.MoveNext();)
{
schema = ((global::System.Xml.Schema.XmlSchema)(schemas.Current));
s2.SetLength(0);
schema.Write(s2);
if ((s1.Length == s2.Length))
{
s1.Position = 0;
s2.Position = 0;
for (; ((s1.Position != s1.Length) &&
(s1.ReadByte() == s2.ReadByte()));)
{
;
}
if ((s1.Position == s1.Length))
{
return(type);
}
}
}
}
finally {
if ((s1 != null))
{
s1.Close();
}
if ((s2 != null))
{
s2.Close();
}
}
}
xs.Add(dsSchema);
return(type);
}
private static bool CreateClientRelationship(ImportData data, int clientId)
{
ImportDataSet ds = new ImportDataSet();
ImportDataSetTableAdapters.Operators_ClientsTableAdapter adapt = new ImportDataSetTableAdapters.Operators_ClientsTableAdapter();
var row = ds.Operators_Clients.NewOperators_ClientsRow();
row.OperatorId = data.OperatorId;
row.ClientId = clientId;
row.Code = data.ClientCode;
ds.Operators_Clients.AddOperators_ClientsRow(row);
return(adapt.Update(ds.Operators_Clients) > 0);
}
public MarkerGen1( LinksDataSet dsLinks, ImportDataSet dsImport )
{
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( dsLinks.tblSubject.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblSubject.");
if ( dsLinks.tblRelatedStructure.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblRelatedStructure.");
if ( dsLinks.tblRosterGen1.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblRosterGen1.");
if ( dsLinks.tblParentsOfGen1Current.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblParentsOfGen1Current.");
if ( dsLinks.tblParentsOfGen1Retro.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblParentsOfGen1Retro.");
if ( dsImport.tblGeocodeSanitized.Count <= 0 ) throw new ArgumentException("There shouldn't be zero rows in tblGeocodeSanitized.");
if ( dsLinks.tblMarkerGen1.Count != 0 ) throw new ArgumentException("There should be zero rows in tblMarkerGen1.");
_dsLinks = dsLinks;
_dsImport = dsImport;
_itemIDsString = CommonCalculations.ConvertItemsToString(_items);
}
public Response( ImportDataSet dsImport, LinksDataSet dsLinks )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( dsLinks.tblResponse.Count != 0 ) throw new InvalidOperationException("tblResponse must be empty before creating rows for it.");
if ( dsImport.tblGen1Links.Count == 0 ) throw new InvalidOperationException("tblGen1Links must NOT be empty before reading responses from it.");
if ( dsImport.tblGen2Links.Count == 0 ) throw new InvalidOperationException("tblGen2Links must NOT be empty before reading responses from it.");
if ( dsImport.tblGen2LinksFromGen1.Count == 0 ) throw new InvalidOperationException("tblGen2LinksFromGen1 must NOT be empty before reading responses from it.");
if ( dsImport.tblGen2ImplicitFather.Count == 0 ) throw new InvalidOperationException("tblGen2ImplicitFather must NOT be empty before reading responses from it.");
if( dsImport.tblGen1Outcomes.Count == 0 ) throw new InvalidOperationException("tblGen1Outcomes must NOT be empty before reading responses from it.");
if( dsImport.tblGen2OutcomesHeight.Count == 0 ) throw new InvalidOperationException("tblGen2OutcomesHeight must NOT be empty before reading responses from it.");
if( dsImport.tblGen2OutcomesWeight.Count == 0 ) throw new InvalidOperationException("tblGen2OutcomesWeight must NOT be empty before reading responses from it.");
if( dsImport.tblGen2OutcomesMath.Count == 0 ) throw new InvalidOperationException("tblGen2OutcomesMath must NOT be empty before reading responses from it.");
_dsImport = dsImport;
_dsLinks = dsLinks;
}
public static string CreateSubject( ImportDataSet dsImport, LinksDataSet dsLinks )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsImport.tblGen1Links.Rows.Count != Constants.Gen1Count ) throw new ArgumentException("There should be exactly " + Constants.Gen1Count + " Gen1 subject rows, but instead there are " + dsImport.tblGen1Links.Rows.Count + ".");
if ( dsImport.tblGen2Links.Rows.Count != Constants.Gen2Count ) throw new ArgumentException("There should be exactly " + Constants.Gen2Count + " Gen2 subject rows, but instead there are " + dsImport.tblGen2Links.Rows.Count + ".");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( dsLinks.tblSubject.Count != 0 ) throw new InvalidOperationException("tblSubject must be empty before creating rows for it.");
Stopwatch sw = new Stopwatch();
sw.Start();
Int32 subjectRecordsAddedCount = 0;
foreach ( ImportDataSet.tblGen1LinksRow drGen1 in dsImport.tblGen1Links ) {
LinksDataSet.tblSubjectRow drBare = dsLinks.tblSubject.NewtblSubjectRow();
drBare.SubjectID = (Int32)drGen1[Constants.Gen1SubjectIDColumn];
drBare.SubjectTag = drBare.SubjectID * 100;//For Gen1 subjects, append "00" at the end.
drBare.ExtendedID = Convert.ToInt16(drGen1[Constants.Gen1ExtendedFamilyIDColumn]);
drBare.Generation = (byte)Generation.Gen1;
drBare.Gender = Convert.ToByte(drGen1[Constants.Gen1GenderColumn]);
dsLinks.tblSubject.AddtblSubjectRow(drBare);
subjectRecordsAddedCount += 1;
}
Trace.Assert(subjectRecordsAddedCount == Constants.Gen1Count, "The number of added Gen1 subjects should be correct.");
foreach ( ImportDataSet.tblGen2LinksRow drGen2 in dsImport.tblGen2Links ) {
LinksDataSet.tblSubjectRow drBare = dsLinks.tblSubject.NewtblSubjectRow();
drBare.SubjectID = drGen2.C0000100;
drBare.SubjectTag = drBare.SubjectID;
Int32 motherID = drGen2.C0000200;
drBare.ExtendedID = RetrieveExtendedFamilyIDFromGenMotherID(dsImport, motherID);
drBare.Generation = (byte)Generation.Gen2;
Int32 genderTemp = drGen2.C0005400;
if ( genderTemp == -3 ) genderTemp = (byte)Gender.InvalidSkipGen2;
drBare.Gender = (byte)genderTemp;
dsLinks.tblSubject.AddtblSubjectRow(drBare);
subjectRecordsAddedCount += 1;
}
Trace.Assert(subjectRecordsAddedCount == Constants.Gen1Count+ Constants.Gen2Count, "The number of added Gen2 subjects should be correct.");
sw.Stop();
Int32 expectedRowCount = dsImport.tblGen1Links.Rows.Count + dsImport.tblGen2Links.Rows.Count;
Trace.Assert(expectedRowCount == subjectRecordsAddedCount, "The correct number of subjects should be added.");
return string.Format("{0:N0} Subject records were enumerated.\nElapsed time: {1}", subjectRecordsAddedCount, sw.Elapsed.ToString());
}
public void Dispose()
{
if (m_XDbConnection == null)
{
return;
}
try
{
if (m_XDbConnection.State == ConnectionState.Open)
{
m_XDbConnection.Close();
}
ImportDataSet.Clear();
ImportDataSet.Dispose();
ImportDataSet = null;
}
catch { }
finally
{
m_XDbConnection = null;
}
}
public static global::System.Xml.Schema.XmlSchemaComplexType GetTypedTableSchema(global::System.Xml.Schema.XmlSchemaSet xs)
{
global::System.Xml.Schema.XmlSchemaComplexType type = new global::System.Xml.Schema.XmlSchemaComplexType();
global::System.Xml.Schema.XmlSchemaSequence sequence = new global::System.Xml.Schema.XmlSchemaSequence();
ImportDataSet ds = new ImportDataSet();
global::System.Xml.Schema.XmlSchemaAny any1 = new global::System.Xml.Schema.XmlSchemaAny();
any1.Namespace = "http://www.w3.org/2001/XMLSchema";
any1.MinOccurs = new decimal(0);
any1.MaxOccurs = decimal.MaxValue;
any1.ProcessContents = global::System.Xml.Schema.XmlSchemaContentProcessing.Lax;
sequence.Items.Add(any1);
global::System.Xml.Schema.XmlSchemaAny any2 = new global::System.Xml.Schema.XmlSchemaAny();
any2.Namespace = "urn:schemas-microsoft-com:xml-diffgram-v1";
any2.MinOccurs = new decimal(1);
any2.ProcessContents = global::System.Xml.Schema.XmlSchemaContentProcessing.Lax;
sequence.Items.Add(any2);
global::System.Xml.Schema.XmlSchemaAttribute attribute1 = new global::System.Xml.Schema.XmlSchemaAttribute();
attribute1.Name = "namespace";
attribute1.FixedValue = ds.Namespace;
type.Attributes.Add(attribute1);
global::System.Xml.Schema.XmlSchemaAttribute attribute2 = new global::System.Xml.Schema.XmlSchemaAttribute();
attribute2.Name = "tableTypeName";
attribute2.FixedValue = "TransactionsDataTable";
type.Attributes.Add(attribute2);
type.Particle = sequence;
global::System.Xml.Schema.XmlSchema dsSchema = ds.GetSchemaSerializable();
if (xs.Contains(dsSchema.TargetNamespace))
{
global::System.IO.MemoryStream s1 = new global::System.IO.MemoryStream();
global::System.IO.MemoryStream s2 = new global::System.IO.MemoryStream();
try {
global::System.Xml.Schema.XmlSchema schema = null;
dsSchema.Write(s1);
for (global::System.Collections.IEnumerator schemas = xs.Schemas(dsSchema.TargetNamespace).GetEnumerator(); schemas.MoveNext();)
{
schema = ((global::System.Xml.Schema.XmlSchema)(schemas.Current));
s2.SetLength(0);
schema.Write(s2);
if ((s1.Length == s2.Length))
{
s1.Position = 0;
s2.Position = 0;
for (; ((s1.Position != s1.Length) &&
(s1.ReadByte() == s2.ReadByte()));)
{
;
}
if ((s1.Position == s1.Length))
{
return(type);
}
}
}
}
finally {
if ((s1 != null))
{
s1.Close();
}
if ((s2 != null))
{
s2.Close();
}
}
}
xs.Add(dsSchema);
return(type);
}
private static Int16 RetrieveExtendedFamilyIDFromGenMotherID( ImportDataSet dsImport, Int32 motherID )
{
ImportDataSet.tblGen1LinksRow drGen1 = dsImport.tblGen1Links.FindByR0000100(motherID);
Trace.Assert(drGen1 != null, "The retrieved mother's row should not be null for Gen1 subject '" + motherID + "'.");
return (Int16)drGen1.R0000149;
}
public RGen2Pass1( ImportDataSet dsImport, LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft, LinksDataSet.tblRelatedStructureRow drRight )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( drRight == null ) throw new ArgumentNullException("drRight");
if ( dsImport.tblLinks2004Gen2.Count == 0 ) throw new InvalidOperationException("tblLinks2004Gen2 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMzManual.Count == 0 ) throw new InvalidOperationException("tblMzManual must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubjectDetails.Count == 0 ) throw new InvalidOperationException("tblSubjectDetails must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMarkerGen2.Count == 0 ) throw new InvalidOperationException("tblMarkerGen2 must NOT be empty before assigning R values from it.");
_dsImport = dsImport;
_dsLinks = dsLinks;
_drLeft = drLeft;
_drRight = drRight;
_idRelatedLeft = _drLeft.ID;
_idRelatedRight = _drRight.ID;
_drBare1 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S1);
_drBare2 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S2);
_drSubjectDetails1 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S1);
_drSubjectDetails2 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S2);
_extendedID = _drLeft.tblSubjectRowByFK_tblRelatedStructure_tblSubject_Subject1.ExtendedID;
if ( _drSubjectDetails1.BirthOrderInNls <= _drSubjectDetails2.BirthOrderInNls ) {//This is the way it usually is. Recall twins were assigned tied birth orders
_idRelatedOlderAboutYounger = _idRelatedLeft;
_idRelatedYoungerAboutOlder = _idRelatedRight;
}
else if ( _drSubjectDetails1.BirthOrderInNls > _drSubjectDetails2.BirthOrderInNls ) {
_idRelatedOlderAboutYounger = _idRelatedRight;
_idRelatedYoungerAboutOlder = _idRelatedLeft;
}
_dtMarkersGen2 = MarkerGen2.PairRelevantMarkerRows(_idRelatedLeft, _idRelatedRight, _dsLinks, _extendedID);
LinksDataSet.tblMzManualRow drMzManual = Retrieve.MzManualRecord(_drBare1, _drBare2, _dsLinks);
if ( drMzManual == null ) {
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
}
else {
_multipleBirth = (MultipleBirth)drMzManual.MultipleBirthIfSameSex;
_isMZ = (Tristate)drMzManual.IsMz;
}
MarkerEvidence babyDaddyDeathDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDeathDate, _dtMarkersGen2);
MarkerEvidence babyDaddyAlive = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAlive, _dtMarkersGen2);
MarkerEvidence babyDaddyInHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyInHH, _dtMarkersGen2);
MarkerEvidence babyDaddyLeftHHDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyLeftHHDate, _dtMarkersGen2);
MarkerEvidence babyDaddyDistanceFromHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDistanceFromHH, _dtMarkersGen2);
MarkerEvidence babyDaddyAsthma = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAsthma, _dtMarkersGen2);
_rImplicitPass1 = CalculateRImplicitPass1(babyDaddyDeathDate, babyDaddyAlive, babyDaddyInHH, babyDaddyLeftHHDate, babyDaddyDistanceFromHH, babyDaddyAsthma);
//_rImplicit not set;
_rImplicit2004 = RetrieveRImplicit2004();
_rExplicitOldestSibVersion = CalculateRExplicitOldestSibVersion();
_rExplicitYoungestSibVersion = CalculateRExplicitYoungestSibVersion();
_rExplicitPass1 = CalculateRExplicitPass1(_isMZ, _multipleBirth);
//_rExplicit not set;
_rPass1 = CalculateRPass1();
//_r not set;
//_rPeek not set;
}
private void ImportData(object o)
{
int doneCount = 0;
int failedCount = 0;
int successCount = 0;
Action <int> reportProgress = null;
if (o is BackgroundWorker)
{
reportProgress = (o as BackgroundWorker).ReportProgress;
}
else
{
reportProgress = x => { }
};
while (true)
{
ImportDataSet currentSet = null;
lock (_queueLock) {
if (_importSetQueue.Count == 0)
{
if (null == _moveSetQueue)
{
_importSetQueue = null;
break;
}
Thread.Sleep(100);
}
else
{
currentSet = _importSetQueue.Dequeue();
}
}
if (null != currentSet)
{
bool savedData = false;
int lastAnemId = -1;
foreach (var file in currentSet.Files)
{
FileInfo fileLocation;
if (!currentSet.MovedToLocation.TryGetValue(file, out fileLocation))
{
fileLocation = file.Path;
}
if (null != fileLocation)
{
var currentFile = file.Path == fileLocation ? file : DaqDataFileInfo.Create(fileLocation);
try {
var pushOk = _dataStore.Push(
currentSet.Sensor.Name, GetPackedReadings(currentFile), _recordOverwrite);
if (pushOk)
{
successCount++;
savedData = true;
lastAnemId = file.Nid;
}
else
{
failedCount++;
}
}
catch {
failedCount++;
}
}
}
if (savedData)
{
_dataStore.SetLatestSensorNameForHardwareId(
currentSet.Sensor.Name,
((char)(lastAnemId + (byte)('A'))).ToString()
);
}
System.Diagnostics.Debug.WriteLine("Importing..." + currentSet.Files.Count);
doneCount++;
}
lock (_queueLock) {
ImportProgress = doneCount / (double)MaxQueue;
reportProgress((int)(Progress * 100));
}
}
_message = null;
if (failedCount > 0 || successCount == 0)
{
_message = "Data import failed.";
}
else
{
_message = "Data import completed successfully.";
}
lock (_queueLock) {
ImportProgress = 1.0;
reportProgress((int)(Progress * 100));
}
}
}
public void Dispose()
{
ImportDataSet.DisposeObject();
ImportErrorDataSet.DisposeObject();
}
private Int32 FromBioparentBirthState( Bioparent bioparent, LinksDataSet.tblRelatedStructureRow drRelated, ImportDataSet.tblGeocodeSanitizedDataTable dtGeocode )
{
const Int16 year = ItemYears.Gen1BioparentBirthState;
Int32 subjectSmaller = Math.Min(drRelated.SubjectTag_S1, drRelated.SubjectTag_S2);
Int32 subjectLarger = Math.Max(drRelated.SubjectTag_S1, drRelated.SubjectTag_S2);
ImportDataSet.tblGeocodeSanitizedRow drGeo = dtGeocode.FindBySubjectTag_S1SubjectTag_S2(subjectSmaller, subjectLarger);
MarkerType markerType;
MarkerEvidence mzEvidence = MarkerEvidence.Irrelevant;
MarkerEvidence shareBiomom = MarkerEvidence.Irrelevant;
MarkerEvidence shareBiodad = MarkerEvidence.Irrelevant;
switch ( bioparent ) {
case Bioparent.Mom:
markerType = MarkerType.Gen1BiomomBirthState;
if ( drGeo.BirthMotherStateMissing_1 || drGeo.BirthMotherStateMissing_2 )
shareBiomom = MarkerEvidence.Missing;
else if ( drGeo.BirthMotherStateEqual )
shareBiomom = MarkerEvidence.Consistent;
else if ( !drGeo.BirthMotherStateEqual )
shareBiomom = MarkerEvidence.Disconfirms;
else
throw new InvalidOperationException("The execution should not have gotten here.");
mzEvidence = shareBiomom;
break;
case Bioparent.Dad:
markerType = MarkerType.Gen1BiodadBirthState;
if ( drGeo.BirthFatherStateMissing_1 || drGeo.BirthFatherStateMissing_2 )
shareBiodad = MarkerEvidence.Missing;
else if ( drGeo.BirthFatherStateEqual )
shareBiodad = MarkerEvidence.Consistent;
else if ( !drGeo.BirthFatherStateEqual )
shareBiodad = MarkerEvidence.Disconfirms;
else
throw new InvalidOperationException("The execution should not have gotten here.");
mzEvidence = shareBiodad;
break;
default:
throw new ArgumentOutOfRangeException("bioparent", bioparent, "The 'FromShareBioparent' function does not accommodate this bioparent value.");
}
AddMarkerRow(drRelated.ExtendedID, drRelated.ID, markerType, year, mzEvidence: mzEvidence, sameGenerationEvidence: MarkerEvidence.Irrelevant,
biomomEvidence: shareBiomom, biodadEvidence: shareBiodad, biograndparentEvidence: MarkerEvidence.Ambiguous);
const Int32 recordsAdded = 1;
return recordsAdded;
}
public void SaveTemp()
{
string fileName = FileUtil.GetRealFileName("importTemp.xml", FilePathPosition.Xml);
ImportDataSet.WriteXml(fileName, XmlWriteMode.WriteSchema);
}
public void Dispose()
{
ImportDataSet.DisposeObject();
ErrorTable.DisposeObject();
}
private float? _rPass1 = float.NaN; // float.NaN;
#endregion Fields
#region Constructors
public RGen1Pass1( ImportDataSet dsImport, LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft, LinksDataSet.tblRelatedStructureRow drRight )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( drRight == null ) throw new ArgumentNullException("drRight");
if ( dsImport.tblLinks2004Gen1.Count == 0 ) throw new InvalidOperationException("tblLinks2004Gen1 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMzManual.Count == 0 ) throw new InvalidOperationException("tblMzManual must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
if ( dsLinks.tblRosterGen1.Count == 0 ) throw new InvalidOperationException("tblRosterGen1 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMarkerGen1.Count == 0 ) throw new InvalidOperationException("tblMarkerGen2 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubjectDetails.Count == 0 ) throw new InvalidOperationException("tblSubjectDetails must NOT be empty before assigning R values from it.");
_dsImport = dsImport;
_dsLinks = dsLinks;
_drLeft = drLeft;
_drRight = drRight;
_idRelatedLeft = _drLeft.ID;
_idRelatedRight = _drRight.ID;
_drSubjectDetails1 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S1);
_drSubjectDetails2 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S2);
_extendedID = _drLeft.tblSubjectRowByFK_tblRelatedStructure_tblSubject_Subject1.ExtendedID;
//LinksDataSet.tblRosterGen1Row drRoster = _dsLinks.tblRosterGen1.FindByRelatedID(drLeft.ID);
//Tristate rosterShareBiomom = (Tristate)drRoster.ShareBiomom;
//Tristate rosterShareBiodad = (Tristate)drRoster.ShareBiodad;
//if ( drRoster.IsRNull() ) _rRoster = null;
//else _rRoster = (float)drRoster.R;
if ( _drSubjectDetails1.BirthOrderInNls <= _drSubjectDetails2.BirthOrderInNls ) {//This is the way it usually is. Remember that twins were assigned tied birth orders
_idRelatedOlderAboutYounger = _idRelatedLeft;
_idRelatedYoungerAboutOlder = _idRelatedRight;
}
else if ( _drSubjectDetails1.BirthOrderInNls > _drSubjectDetails2.BirthOrderInNls ) {
_idRelatedOlderAboutYounger = _idRelatedRight;
_idRelatedYoungerAboutOlder = _idRelatedLeft;
}
_dtMarkersGen1 = MarkerGen1.PairRelevantMarkerRows(_idRelatedLeft, _idRelatedRight, _dsLinks, _extendedID);
LinksDataSet.tblMzManualRow drMz = Retrieve.MzManualRecord(_drLeft.SubjectTag_S1, _drLeft.SubjectTag_S2, _dsLinks);
if ( drMz == null ) {
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
_isRelatedInMzManual = Tristate.DoNotKnow;
}
else {
_multipleBirth = (MultipleBirth)drMz.MultipleBirthIfSameSex;
_isMZ = (Tristate)drMz.IsMz;
if ( drMz.IsRelatedNull() ) _isRelatedInMzManual = Tristate.DoNotKnow;
else if ( drMz.Related ) _isRelatedInMzManual = Tristate.Yes;
else _isRelatedInMzManual = Tristate.No;
}
MarkerEvidence explicitBiomomFromOlder = ReduceShareBioparentToOne(MarkerType.ShareBiomom, ItemYears.Gen1ShareBioparent.Length, _idRelatedOlderAboutYounger);
MarkerEvidence explicitBiodadFromOlder = ReduceShareBioparentToOne(MarkerType.ShareBiodad, ItemYears.Gen1ShareBioparent.Length, _idRelatedOlderAboutYounger);
MarkerEvidence explicitBiomomFromYounger = ReduceShareBioparentToOne(MarkerType.ShareBiomom, ItemYears.Gen1ShareBioparent.Length, _idRelatedYoungerAboutOlder);
MarkerEvidence explicitBiodadFromYounger = ReduceShareBioparentToOne(MarkerType.ShareBiodad, ItemYears.Gen1ShareBioparent.Length, _idRelatedYoungerAboutOlder);
MarkerEvidence biomomInHH1979 = MarkerGen1.RetrieveParentMarkerMultiYear(_idRelatedOlderAboutYounger, MarkerType.Gen1BiomomInHH, 1979, Bioparent.Mom, _dtMarkersGen1);
MarkerEvidence biodadInHH1979 = MarkerGen1.RetrieveParentMarkerMultiYear(_idRelatedOlderAboutYounger, MarkerType.Gen1BiodadInHH, 1979, Bioparent.Dad, _dtMarkersGen1);
MarkerEvidence biomomDeathAge = MarkerGen1.RetrieveParentMarkerSingleYear(_idRelatedOlderAboutYounger, MarkerType.Gen1BiomomDeathAge, Bioparent.Mom, _dtMarkersGen1);
MarkerEvidence biodadDeathAge = MarkerGen1.RetrieveParentMarkerSingleYear(_idRelatedOlderAboutYounger, MarkerType.Gen1BiodadDeathAge, Bioparent.Dad, _dtMarkersGen1);
_explicitShareBiomomPass1 = CommonFunctions.TranslateEvidenceToTristate(explicitBiomomFromOlder, explicitBiomomFromYounger);
_explicitShareBiodadPass1 = CommonFunctions.TranslateEvidenceToTristate(explicitBiodadFromOlder, explicitBiodadFromYounger);
_implicitShareBiomomPass1 = ImplicitShareBioparent(inHH1979: biomomInHH1979, deathAge: biomomDeathAge);
_implicitShareBiodadPass1 = ImplicitShareBioparent(inHH1979: biodadInHH1979, deathAge: biodadDeathAge);
_shareBiomomPass1 = CommonFunctions.TakePriority(_explicitShareBiomomPass1, _implicitShareBiomomPass1);
_shareBiodadPass1 = CommonFunctions.TakePriority(_explicitShareBiodadPass1, _implicitShareBiodadPass1);
_rExplicitOldestSibVersion = CalculateRExplicitSingleSibVersion(explicitBiomomFromOlder, explicitBiodadFromOlder);
_rExplicitYoungestSibVersion = CalculateRExplicitSingleSibVersion(explicitBiomomFromYounger, explicitBiodadFromYounger);
_rExplicitPass1 = CommonFunctions.TranslateToR(shareBiomom: _explicitShareBiomomPass1, shareBiodad: _explicitShareBiodadPass1, mustDecide: false);
_rImplicitPass1 = CommonFunctions.TranslateToR(shareBiomom: _implicitShareBiomomPass1, shareBiodad: _implicitShareBiodadPass1, mustDecide: false);
_rImplicit2004 = RetrieveRImplicit2004();
_rPass1 = CalculateRFull(shareBiomom: _shareBiomomPass1, shareBiodad: _shareBiodadPass1,
multiple: _multipleBirth, isMZ: _isMZ, isRelatedInMZManual: _isRelatedInMzManual, idRelated: _idRelatedLeft, dtRoster: _dsLinks.tblRosterGen1);
}
