/// <summary>
/// Initializes a new instance of the VirtualAlignedSequenceList class with a specified provider,
/// a specified parser, and a specifed sequence count.
/// </summary>
/// <param name="provider">SequencePointer provider from sidecar file.</param>
/// <param name="parser">Parser used to parse sequence data on request.</param>
/// <param name="count">Number of items in the actual file.</param>
public VirtualAlignedSequenceList(SidecarFileProvider provider, IVirtualSequenceAlignmentParser parser, int count)
{
_sequenceParser = parser;
_sidecarProvider = provider;
_count = count;
_sequenceDictionary = new Dictionary <int, WeakReference>();
}
public void ValidateSamParserWithDVIscFile()
{
// Gets the expected sequence from the Xml
string filePath = _utilityObj._xmlUtil.GetTextValue(
Constants.SAMFileWithRefNode, Constants.FilePathNode);
ISequenceAlignmentParser iSeqParser =
SequenceAlignmentParsers.FindParserByFile(filePath);
if (null != iSeqParser)
{
IVirtualSequenceAlignmentParser vParserObj =
iSeqParser as IVirtualSequenceAlignmentParser;
if (null != vParserObj)
{
vParserObj.EnforceDataVirtualization = true;
}
else
{
Assert.Fail("SAM P1 Cases : Could not find the SAM Parser Object.");
}
string iscFilePath =
string.Concat(filePath, ".isc");
iSeqParser.Parse(filePath);
if (File.Exists(iscFilePath))
{
Console.WriteLine(
"SAM P1 Cases : DV enabled as expected and isc file created successfully.");
ApplicationLog.WriteLine(
"SAM P1 Cases : DV enabled as expected and isc file created successfully.");
}
else
{
Assert.Fail("SAM P1 Cases : DV not enabled as expected.");
}
}
else
{
Assert.Fail("SAM P1 Cases : Could not find the SAM file");
}
}
