public ParameterImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, ASTHandler astHandler, IMoBiContext context, IUnitDefinitionImporter unitDefinitionImporter, IFormulaFactory formulaFactory)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_paramList = new List <IEntity>();
_unitDefinitionImporter = unitDefinitionImporter;
_formulaFactory = formulaFactory;
}
public SpeciesImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoleculeBuilderFactory moleculeBuilderFactory, IMoleculeStartValuesCreator moleculeStartValuesCreator, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context, IUnitDefinitionImporter unitDefinitionImporter, IFormulaFactory formulaFactory)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_moleculeBuilderFactory = moleculeBuilderFactory;
_moleculeStartValuesCreator = moleculeStartValuesCreator;
_moBiDimensionFactory = moBiDimensionFactory;
_counter = 1;
_dimensionDictionary = new Dictionary <string, Dimension>();
_unitDefinitionImporter = unitDefinitionImporter;
}
public CompartmentImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory,
IMoBiSpatialStructureFactory spatialStructureFactory, IMoBiDimensionFactory moBiDimensionFactory,
ASTHandler astHandler, IMoBiContext context, IFormulaFactory formulaFactory, IUnitDefinitionImporter unitDefinitionImporter)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_objectBaseFactory = objectBaseFactory;
_spatialStructureFactory = spatialStructureFactory;
_dimensionFactory = moBiDimensionFactory;
_formulaFactory = formulaFactory;
_unitDefinitionImporter = unitDefinitionImporter;
}
public ReactionImporter(IObjectPathFactory objectPathFactory, IObjectBaseFactory objectBaseFactory, IMoBiDimensionFactory moBiDimensionFactory, ASTHandler astHandler, IMoBiContext context, IReactionBuildingBlockFactory reactionBuildingBlockFactory, IFunctionDefinitionImporter functionDefinitionImporter, ISpeciesImporter speciesImporter, IUnitDefinitionImporter unitDefinitionImporter)
: base(objectPathFactory, objectBaseFactory, astHandler, context)
{
_dimensionFactory = moBiDimensionFactory;
ReactionBuilderList = new List <IReactionBuilder>();
_passiveTransportList = new List <ITransportBuilder>();
_reactionBuildingBlock = reactionBuildingBlockFactory.Create().WithName(SBMLConstants.SBML_REACTION_BB);
_passiveTransportBuildingBlock = ObjectBaseFactory.Create <IPassiveTransportBuildingBlock>()
.WithName(SBMLConstants.SBML_PASSIVETRANSPORTS_BB);
_functionDefinitionImporter = functionDefinitionImporter;
_speciesImporter = speciesImporter;
_unitDefinitionImporter = unitDefinitionImporter;
}
//Not possible to inject during construction due to circular references
public void SetUnitDefinitionImporter(IUnitDefinitionImporter unitDefinitionImporter)
{
_unitDefinitionImporter = unitDefinitionImporter;
}
