public CellVisualiser(IRenderer renderer)
{
m_renderer = renderer;
m_scene = m_renderer.GetNewScene();
m_positions = new List <List <Vector3d> >();
m_random = new Random();
m_renderArrays = new RenderArrays3d();
m_renderArrays.Positions = new List <Vector3d>();
m_renderArrays.Colours = new List <Colour>();
m_scene.CreateCamera();
m_scene.SetCurrentCamera(0);
m_scene.RenderArrays3d.Add(m_renderArrays);
m_baseColours = new Colour[11];
m_baseColours[00] = new Colour()
{
R = 1.0f, G = 0.0f, B = 0.0f, A = 0.0f
};
m_baseColours[01] = new Colour()
{
R = 0.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[02] = new Colour()
{
R = 0.0f, G = 0.0f, B = 1.0f, A = 0.0f
};
m_baseColours[03] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[04] = new Colour()
{
R = 0.0f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[05] = new Colour()
{
R = 1.0f, G = 0.5f, B = 0.5f, A = 0.0f
};
m_baseColours[06] = new Colour()
{
R = 0.5f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[07] = new Colour()
{
R = 0.5f, G = 0.5f, B = 1.0f, A = 0.0f
};
m_baseColours[08] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[09] = new Colour()
{
R = 0.5f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[10] = new Colour()
{
R = 1.0f, G = 0.5f, B = 1.0f, A = 0.0f
};
LoadFile("C:/Users/Tim/Desktop/UbuntuScratch/chasteOutput/OverlappingSpheres/results_from_time_0/results.viznodes");
}
const float MStageRequiredTimesteps = 1238.4f / SecondsPerTimestep; // 20.64 minutes (from Potten92)
public CryptCC(IRenderer renderer, string filename, float averageGrowthTimeSeconds, float attachmentForce)
{
string extension = System.IO.Path.GetExtension(filename);
filename = System.IO.Path.GetDirectoryName(filename) + @"\" + System.IO.Path.GetFileNameWithoutExtension(filename);
outfile = new System.IO.StreamWriter(@"C:\Users\Tim\Desktop\" + filename + "_CC" + (averageGrowthTimeSeconds / 3600).ToString() + "hrs_AF" + attachmentForce.ToString() + extension, false);
m_renderer = renderer;
m_scene = m_renderer.GetNewScene();
m_averageGrowthTimeSeconds = averageGrowthTimeSeconds;
m_offMembraneRestorationFactor = attachmentForce;
m_random = new Random(DateTime.Now.Millisecond);
m_normalRNG = new NormalDistributionRNG(m_random, m_averageGrowthTimesteps, GrowthTimestepsStandardDeviation);
m_cells = new CellArrayCC();
m_renderArraysAnoikis = new RenderArrays3d();
m_renderArraysAnoikis.Positions = new List <Vector3d>();
m_renderArraysAnoikis.Colours = new List <Colour>();
m_renderArraysAnoikis.Visible = new List <bool>();
m_renderArraysCells = new RenderArrays3d();
m_renderArraysCells.Positions = m_cells.Positions;
m_renderArraysCells.Colours = m_cells.Colours;
m_renderArraysCells.Visible = m_cells.Active;
m_scene.CreateCamera();
m_scene.SetCurrentCamera(0);
m_scene.RenderArrays3d.Add(m_renderArraysCells);
m_baseColours = new Colour[11];
m_colourCounts = new int[11];
m_baseColours[00] = new Colour()
{
R = 1.0f, G = 0.0f, B = 0.0f, A = 0.0f
};
m_baseColours[01] = new Colour()
{
R = 0.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[02] = new Colour()
{
R = 0.0f, G = 0.0f, B = 1.0f, A = 0.0f
};
m_baseColours[03] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[04] = new Colour()
{
R = 0.0f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[05] = new Colour()
{
R = 1.0f, G = 0.5f, B = 0.5f, A = 0.0f
};
m_baseColours[06] = new Colour()
{
R = 0.5f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[07] = new Colour()
{
R = 0.5f, G = 0.5f, B = 1.0f, A = 0.0f
};
m_baseColours[08] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[09] = new Colour()
{
R = 0.5f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[10] = new Colour()
{
R = 1.0f, G = 0.5f, B = 1.0f, A = 0.0f
};
m_crypts = new CryptArrayCC();
float centeringOffset = m_fieldHalfSize - 2000f;
for (int y = 0; y < m_numCryptsPerSide; y++)
{
for (int x = 0; x < m_numCryptsPerSide; x++)
{
int colourIndex = (x + y * m_numCryptsPerSide) % m_baseColours.Count();
PopulateCrypt(x, y, colourIndex, centeringOffset);
m_crypts.Add(new Vector3d(x * m_initialCryptSeparation - centeringOffset, 0.0f, y * m_initialCryptSeparation - centeringOffset));
}
}
m_grid = new UniformIndexGrid(m_numCryptsPerSide * 2, 30, m_numCryptsPerSide * 2, new Vector3d(2.0f * (m_colonBoundary.X + 100.0f), -1.0f * (CryptHeight + 500.0f), 2.0f * (m_colonBoundary.Y + 100.0f)), new Vector3d(-1.0f * (m_colonBoundary.X + 10.0f), 0.0f, -1.0f * (m_colonBoundary.Y + 10.0f)));
}
public World(IRenderer renderer)
{
m_baseColours = new Colour[12];
m_baseColours[00] = new Colour()
{
R = 1.0f, G = 0.0f, B = 0.0f, A = 0.0f
};
m_baseColours[01] = new Colour()
{
R = 0.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[02] = new Colour()
{
R = 0.0f, G = 0.0f, B = 1.0f, A = 0.0f
};
m_baseColours[03] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.0f, A = 0.0f
};
m_baseColours[04] = new Colour()
{
R = 0.0f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[05] = new Colour()
{
R = 1.0f, G = 0.0f, B = 1.0f, A = 0.0f
};
m_baseColours[06] = new Colour()
{
R = 1.0f, G = 0.5f, B = 0.5f, A = 0.0f
};
m_baseColours[07] = new Colour()
{
R = 0.5f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[08] = new Colour()
{
R = 0.5f, G = 0.5f, B = 1.0f, A = 0.0f
};
m_baseColours[09] = new Colour()
{
R = 1.0f, G = 1.0f, B = 0.5f, A = 0.0f
};
m_baseColours[10] = new Colour()
{
R = 0.5f, G = 1.0f, B = 1.0f, A = 0.0f
};
m_baseColours[11] = new Colour()
{
R = 1.0f, G = 0.5f, B = 1.0f, A = 0.0f
};
m_random = new Random();
m_renderer = renderer;
m_scene = m_renderer.GetNewScene();
m_scene.CreateCamera();
m_scene.SetCurrentCamera(0);
m_basisRenderArrays = new RenderArrays();
m_springRenderArrays = new RenderArrays();
m_bBoxRenderArrays = new RenderArrays();
m_renderArrays = new RenderArrays();
m_blobs = new BlobArrays();
m_directionalSprings = new DirectionalSpringArray();
m_collisions = new List <Tuple <int, int> >();
m_cellData = new CellDataArrays();
m_BBoxTree = new BBoxTree();
m_springs = new SpringArray();
m_renderArrays.Positions = m_blobs.Positions;
m_renderArrays.Colours = m_blobs.Colours;
m_bBoxRenderArrays.Colours.Add(m_baseColours[0]);
m_bBoxRenderArrays.Positions.Add(new Vector2d());
//InitVisualisationTest();
for (int i = -0; i < 1; i++)
{
bool grow = i == 0 ? true : false;
InitCell(new Vector2d()
{
X = (float)(250.0f * i + 150.0f), Y = 0
}, i + 4, grow);
}
//InitCell(new Vector2d() { X = -100.0f, Y = 0.0f }, 0, true);
m_scene.RenderArrays.Add(m_renderArrays);
//m_scene.RenderArrays.Add(m_bBoxRenderArrays);
m_scene.RenderArrays.Add(m_springRenderArrays);
m_scene.RenderArrays.Add(m_basisRenderArrays);
m_basisRenderArrays.Positions.Add(new Vector2d());
m_basisRenderArrays.Colours.Add(m_baseColours[5]);
m_basisRenderArrays.Positions.Add(new Vector2d());
m_basisRenderArrays.Colours.Add(m_baseColours[5]);
}