/// <summary>
/// Parses the sequences from the open file.
/// </summary>
/// <param name="parser">Sequence Parser</param>
/// <param name="filename">Filename to open</param>
/// <returns>Set of parsed sequences.</returns>
public static Tree Parse(this IPhylogeneticTreeParser parser, string filename)
{
using (var fs = File.OpenRead(filename))
{
return(parser.Parse(fs));
}
}
/// <summary>
/// Parses the sequences from the open file.
/// </summary>
/// <param name="parser">Sequence Parser</param>
/// <returns>Set of parsed sequences.</returns>
public static Tree Parse(this IPhylogeneticTreeParser parser)
{
var fs = ParserFormatterExtensions <IPhylogeneticTreeParser> .GetOpenStream(parser, false);
if (fs == null)
{
throw new Exception("You must open a parser before calling Parse.");
}
return(parser.Parse(fs));
}
/// <summary>
/// Closes the parser.
/// </summary>
/// <param name="parser">Parser</param>
public static void Close(this IPhylogeneticTreeParser parser)
{
ParserFormatterExtensions <IPhylogeneticTreeParser> .Close(parser);
}
/// <summary>
/// Opens a sequence file using the parser.
/// </summary>
/// <param name="parser">Parser</param>
/// <param name="filename">File to open</param>
/// <returns>Disposable object to close the stream.</returns>
public static IDisposable Open(this IPhylogeneticTreeParser parser, string filename)
{
return(ParserFormatterExtensions <IPhylogeneticTreeParser> .Open(parser, filename));
}
