private void AddIonSeries(GraphPane peakPane, GraphPane ppmPane, PeakList <MatchedPeak> mgf, double mzTolerance, double minIntensity, IPeptideFragmentationBuilder <MatchedPeak> builder, string sequence, Color tagColor)
{
MatchedPeakUtils.Match(mgf, builder.Build(sequence), mzTolerance, minIntensity);
var ionType = builder.SeriesType.ToString();
var matchedIons = (from m in mgf
where m.Matched && m.PeakType == builder.SeriesType
select m).ToList();
var ppl = new PointPairList();
foreach (var m in matchedIons)
{
ppl.Add(new PointPair(m.Mz, m.Intensity, m.Information));
}
peakPane.AddIndividualLine("", ppl, Color.Black, tagColor);
if (ppmPane != null)
{
var diff = new PointPairList();
foreach (var m in matchedIons)
{
if (isPPM)
{
diff.Add(new PointPair(m.Mz, PrecursorUtils.mz2ppm(m.Mz, m.Mz - m.MatchedMZ)));
}
else
{
diff.Add(new PointPair(m.Mz, m.Mz - m.MatchedMZ));
}
}
ppmPane.AddPoints(diff, tagColor);
}
}