private void updateAlternativeSelection(CompoundGroupSelection snapshotCompoundGroupSelection, ModelCompoundProperties compoundProperties)
{
var compoundGroupSelection = compoundProperties.CompoundGroupSelections.Find(x => x.GroupName == snapshotCompoundGroupSelection.GroupName);
if (compoundGroupSelection == null)
{
_logger.AddError(PKSimConstants.Error.CompoundGroupNotFoundFor(snapshotCompoundGroupSelection.GroupName, compoundProperties.Compound.Name));
return;
}
var alternativeGroup = compoundProperties.Compound.ParameterAlternativeGroup(snapshotCompoundGroupSelection.GroupName);
if (alternativeGroup == null)
{
_logger.AddError(PKSimConstants.Error.CompoundGroupNotFoundFor(snapshotCompoundGroupSelection.GroupName, compoundProperties.Compound.Name));
return;
}
var alternative = alternativeGroup.AlternativeByName(snapshotCompoundGroupSelection.AlternativeName);
if (alternative == null)
{
_logger.AddError(PKSimConstants.Error.CompoundAlternativeNotFoundFor(snapshotCompoundGroupSelection.AlternativeName, alternativeGroup.DefaultAlternative?.Name, snapshotCompoundGroupSelection.GroupName, compoundProperties.Compound.Name));
return;
}
compoundGroupSelection.AlternativeName = snapshotCompoundGroupSelection.AlternativeName;
}
private IDescriptorCondition descriptorConditionFrom(SnapshotDescriptorCondition snapshot)
{
var tag = snapshot.Tag;
switch (snapshot.Type)
{
case Constants.IN_CONTAINER:
return(new InContainerCondition(tag));
case Constants.ALL_TAG:
return(new MatchAllCondition());
case MATCH_TAG:
return(new MatchTagCondition(tag));
case Constants.NOT_IN_CONTAINER:
return(new NotInContainerCondition(tag));
case Constants.NOT:
return(new NotMatchTagCondition(tag));
}
//This should never happen
_logger.AddError(PKSimConstants.Error.CannotCreateDescriptorFromSnapshotFor(snapshot.Type));
return(null);
}
private async Task <string> downloadRemoteFile(string url, string locationInTempFolder, string type)
{
_logger.AddDebug($"Downloading {type.ToLower()} file from {url}...");
var downloadFolder = Path.Combine(_runOptions.TempFolder, locationInTempFolder);
DirectoryHelper.CreateDirectory(downloadFolder);
using (var wc = new WebClient())
{
try
{
var fileName = new Uri(url).Segments.Last();
var fileFullPath = Path.Combine(downloadFolder, fileName);
await wc.DownloadFileTaskAsync(url, fileFullPath);
_logger.AddDebug($"{type} file downloaded from {url} to {fileFullPath}");
return(fileFullPath);
}
catch (Exception e)
{
//Exception is thrown for example if the given url does not exist or if internet access is not possible etc..
_logger.AddError(e.Message);
return(url);
}
}
}
private async Task <IEnumerable <Model.Simulation> > allSmulationsFrom(Simulation[] snapshots, ModelProject project)
{
var simulations = new List <Model.Simulation>();
if (snapshots == null)
{
return(simulations);
}
//do not run tasks in parallel as the same mapper instance may be used concurrently to load two different snapshots
foreach (var snapshot in snapshots)
{
try
{
var simulation = await _simulationMapper.MapToModel(snapshot, project);
simulations.Add(simulation);
}
catch (Exception e)
{
_logger.AddException(e);
_logger.AddError(PKSimConstants.Error.CannotLoadSimulation(snapshot.Name));
}
}
return(simulations);
}
private void showException(Exception ex)
{
var message = ex.FullMessage();
var stackTrace = ex.FullStackTrace();
_exceptionView.Display(message, stackTrace, clipboardContentFrom(message, stackTrace));
_logger.AddError(message);
}
public static void AddException(this ILogger logger, Exception exception, string categoryName = null)
{
//Info message only => Should be shown as warning in log
if (exception.IsInfoException())
{
logger.AddWarning(exception.ExceptionMessage(addContactSupportInfo: false), categoryName);
}
// Not an info message but an exception thrown by the suite. Error without stack trace
else if (exception.IsOSPSuiteException())
{
logger.AddError((exception.ExceptionMessage(addContactSupportInfo: false)), categoryName);
}
// this is bad => Stack trace
else
{
logger.AddError(exception.ExceptionMessageWithStackTrace(false), categoryName);
}
}
public static void AddException(this ILogger logger, Exception exception, string categoryName = null)
{
if (exception.IsInfoException())
{
logger.AddWarning(exception.ExceptionMessage(), categoryName);
}
else
{
logger.AddError(exception.ExceptionMessageWithStackTrace(), categoryName);
}
}
public bool Validate(IObjectBase objectToValidate)
{
var validationResult = _entityValidator.Validate(objectToValidate);
if (validationResult.ValidationState == ValidationState.Valid)
{
return(true);
}
var error = Error.EntityIsInvalid(_executionContext.TypeFor(objectToValidate), objectToValidate.Name);
_logger.AddError(error);
return(false);
}
public override Task <ObserverSetMapping> MapToModel(ObserverSetSelection snapshot, PKSimProject project)
{
var observerSet = project.BuildingBlockByName <Model.ObserverSet>(snapshot.Name);
if (observerSet == null)
{
_logger.AddError(PKSimConstants.Error.CannotFindObserverSetForMapping(snapshot.Name));
return(null);
}
var observerSetMapping = new ObserverSetMapping {
TemplateObserverSetId = observerSet.Id ?? string.Empty
};
return(Task.FromResult(observerSetMapping));
}
private IObserverBuilder createObserverFrom(SnapshotObserver snapshot)
{
if (string.IsNullOrEmpty(snapshot.Type))
{
return(null);
}
switch (snapshot.Type)
{
case AMOUNT_OBSERVER:
return(_objectBaseFactory.Create <AmountObserverBuilder>());
case CONTAINER_OBSERVER:
return(_objectBaseFactory.Create <ContainerObserverBuilder>());
}
_logger.AddError(PKSimConstants.Error.CannotCreateObserverFromSnapshot(snapshot.Type));
return(null);
}
private async Task <bool> ConnectAsync()
{
string url; string login; string password;
_dataProtect.GetPulxerParams(out url, out login, out password);
var res = await _socket.ConnectAsync(url, login, password);
if (!res.IsSuccess)
{
_logger.AddError("LpClientApp", "Pulxer connection error: " + res.Message);
return(false);
}
_core.Initialize(_sysPipe, "Leech Agent");
_logger.AddInfo("LpClientApp", "Pulxer connection successful.");
return(true);
}
private async Task <ModelCompoundProcess> retrieveProcessFrom(SnapshotCompoundProcess snapshot)
{
var template = _compoundProcessRepository.ProcessByName(snapshot.InternalName);
if (template == null)
{
_logger.AddError(PKSimConstants.Error.SnapshotProcessNameNotFound(snapshot.InternalName));
return(null);
}
var process = _cloner.Clone(template);
process.DataSource = snapshot.DataSource;
if (process.IsAnImplementationOf <ISpeciesDependentCompoundProcess>())
{
updateSpeciesDependentParameter(process, snapshot);
}
await UpdateParametersFromSnapshot(snapshot, process, process.InternalName);
return(process);
}
public void MessageBoxError(string message)
{
_logger.AddError(message);
}
public void Load()
{
_logger.AddInfo("BotsConfiguration", "Loading bots configuration ...");
_key_botconf.Clear();
try
{
XmlDocument xDoc = new XmlDocument();
xDoc.Load(_config.GetBotsConfigPath());
foreach (XmlNode xn in xDoc.DocumentElement.ChildNodes)
{
if (xn.Name != "Bot")
{
_logger.AddInfo("BotsConfiguration", "Skip node: " + xn.Name);
continue;
}
var xa_key = xn.Attributes["Key"];
if (xa_key == null)
{
_logger.AddError("BotsConfiguration", "Key attribute not found.");
continue;
}
string key = xa_key.Value;
var xa_assembly = xn.Attributes["Assembly"];
if (xa_assembly == null)
{
_logger.AddError("BotsConfiguration", "Assembly attribute not found.");
continue;
}
string assembly = xa_assembly.Value;
if (!Path.IsPathRooted(assembly))
{
assembly = Path.Combine(_config.GetBotsPath(), assembly);
}
var xa_class = xn.Attributes["Class"];
if (xa_class == null)
{
_logger.AddError("BotsConfiguration", "Class attribute not found.");
continue;
}
string cls = xa_class.Value;
var xa_initdata = xn.Attributes["InitData"];
string initdata = "";
if (xa_initdata != null)
{
initdata = xa_initdata.Value;
}
else
{
_logger.AddInfo("BotsConfiguration", "InitData attribute not found. Empty string used.");
}
if (_key_botconf.ContainsKey(key))
{
_logger.AddError("BotsConfiguration", "Duplicate key: " + key);
continue;
}
_key_botconf.Add(key, new BotConfig()
{
Assembly = assembly,
Class = cls,
InitData = initdata,
Key = key
});
_logger.AddInfo("BotsConfiguration",
string.Format("Bot config load: Key={0}, Assembly={1}, Class={2}", key, assembly, cls));
}
}
catch (FileNotFoundException ex)
{
_logger.AddError("BotsConfiguration", "Bots config file not found");
}
catch (Exception ex)
{
_logger.AddException("BotsConfiguration", ex);
}
}
