protected CodonBase(IGeneticCode geneticCode, ICodonIdentifier codonIdentifier, CodonType codonType,
IEnumerable<INucleotide> nucleotides)
{
this.CodonIdentifier = codonIdentifier;
this.CodonType = codonType;
this.Nucleotides = nucleotides as List<INucleotide> ?? nucleotides.ToList();
if (this.Nucleotides.Count() != geneticCode.CodonLength)
throw new GeneticCodeException("All Codons must be of the specified CodonLength in the Genetic Code.");
}
/// <summary>
///
/// </summary>
/// <param name="geneticCode">The IGeneticCode to which all IOrganisms in this IUniverse adhere.</param>
public Universe(IGeneticCode geneticCode)
: base(geneticCode)
{
}
/// <summary>
/// Converts this ICodon to a IConvertedCodon as specified by the given ICodonConverterIdentifier.
/// </summary>
/// <param name="geneticCode"></param>
/// <param name="codonConverterIdentifier"></param>
/// <returns>The converted IConvertedCodon.</returns>
public IConvertedCodon Convert(IGeneticCode geneticCode, ICodonConverterIdentifier codonConverterIdentifier)
{
return geneticCode.ConvertCodon(codon: this, codonConverterIdentifier: codonConverterIdentifier);
}
protected CodonBase(IGeneticCode geneticCode, ICodonIdentifier codonIdentifier, CodonType codonType,
IEnumerable<INucleotideIdentifier> nucleotides) :
this(geneticCode: geneticCode, codonIdentifier: codonIdentifier, codonType: codonType,
nucleotides: nucleotides.Select(i => geneticCode.Nucleotides[i]))
{
}
