public void should_be_able_to_find_a_matching_kinetic_in_the_simulation_processes_with_the_accurate_kinetic()
{
var error = new List <string>();
foreach (var transportProcess in sut.All().Select(x => x.ProcessName).Distinct())
{
foreach (var flatTransportProcess in _flatProcessRepository.All().Where(p => p.IsActiveTransport()))
{
var simProcess = _simulationProcessRepository.TransportFor(transportProcess, flatTransportProcess.Name);
//This combination is not supported yet and is explicitly excluded
if (transportProcess.Contains("BiDirectional") && flatTransportProcess.Name.Contains("_Hill"))
{
continue;
}
if (simProcess == null)
{
error.Add($"Could not find sim process for individual process '{transportProcess}' and compound process '{flatTransportProcess.Name}'");
}
}
}
error.Count().ShouldBeEqualTo(0, error.ToString("\n"));
}
protected override void DoStart()
{
foreach (var flatProc in _flatProcessesRepo.All().Where(processIsApplication))
{
_applicationTransports.Add(_passiveTransportMapper.MapFrom(flatProc));
}
}
private void fillReactions()
{
foreach (var flatProc in _flatProcessesRepository.All().Where(processIsNonTemplateReaction))
{
_allReactions.Add(_activeProcessMapper.MapFrom(flatProc).DowncastTo <PKSimReaction>());
}
_allReactions.Each(process => _parameterContainerTask.AddProcessBuilderParametersTo(process));
}
protected override void DoStart()
{
var query = _flatProcessesRepository.All().Where(processIsSimulationActiveProcess)
.MapAllUsing(_activeProcessMapper)
.Where(activeProcess => activeProcess != null);
_allSimulationActiveProcesses.AddRange(query);
_allSimulationActiveProcesses.Each(process => _parameterContainerTask.AddProcessBuilderParametersTo(process));
}
public void should_be_able_to_find_a_matching_kinetic_in_the_simulation_processes_with_the_accurate_kinetic()
{
var error = new List <string>();
foreach (var transportProcess in sut.All().Select(x => x.ProcessName).Distinct())
{
foreach (var flatTransportProcess in _flatProcessRepository.All().Where(p => p.IsActiveTransport()))
{
var simProcess = _simulationProcessRepository.TransportFor(transportProcess, flatTransportProcess.Name);
if (simProcess == null)
{
error.Add(string.Format("Could not find sim process for individual process '{0}' and compound process '{1}'", transportProcess, flatTransportProcess.Name));
}
}
}
error.Count().ShouldBeEqualTo(0, error.ToString("\n"));
}