public static IGene Read(IExtendedBinaryReader reader, IDictionary <ushort, IChromosome> indexToChromosome)
{
ushort referenceIndex = reader.ReadOptUInt16();
int start = reader.ReadOptInt32();
int end = reader.ReadOptInt32();
bool onReverseStrand = reader.ReadBoolean();
string symbol = reader.ReadAsciiString();
int hgncId = reader.ReadOptInt32();
var entrezId = CompactId.Read(reader);
var ensemblId = CompactId.Read(reader);
return(new Gene(indexToChromosome[referenceIndex], start, end, onReverseStrand, symbol, hgncId, entrezId, ensemblId));
}
public static IGeneAnnotationSource Read(IExtendedBinaryReader reader)
{
var dataSource = reader.ReadAsciiString();
var isArray = reader.ReadBoolean();
var jsonStringLength = reader.ReadOptInt32();
var jsonStrings = new string[jsonStringLength];
for (int i = 0; i < jsonStringLength; i++)
{
jsonStrings[i] = reader.ReadString();
}
return(new GeneAnnotationSource(dataSource, jsonStrings, isArray));
}
