public void ReloadWithPKSimSettings()
{
var dataImporterSettings = new DataImporterSettings();
dataImporterSettings.AddNamingPatternMetaData(Constants.FILE, Constants.SHEET);
dataImporterSettings.AddNamingPatternMetaData(Constants.FILE, Constants.SHEET, "Species");
using (var serializationContext = SerializationTransaction.Create(_container))
{
var serializer = _modelingXmlSerializerRepository.SerializerFor <ImporterConfiguration>();
var fileName = _dialogCreator.AskForFileToOpen("Save configuration", "xml files (*.xml)|*.xml|All files (*.*)|*.*",
Constants.DirectoryKey.PROJECT);
if (fileName.IsNullOrEmpty())
{
return;
}
var xel = XElement.Load(fileName); // We have to correctly handle the case of cancellation
var configuration = serializer.Deserialize <ImporterConfiguration>(xel, serializationContext);
dataImporterSettings.NameOfMetaDataHoldingMoleculeInformation = "Molecule";
dataImporterSettings.NameOfMetaDataHoldingMolecularWeightInformation = "Molecular Weight";
_dialogCreator.MessageBoxInfo(_dataImporter.ImportFromConfiguration
(
configuration,
_dataImporter.DefaultMetaDataCategoriesForObservedData(),
_dataImporter.ColumnInfosForObservedData(),
dataImporterSettings,
_dialogCreator.AskForFileToOpen(Captions.Importer.OpenFile, Captions.Importer.ImportFileFilter, Constants.DirectoryKey.OBSERVED_DATA)
)?.Count() + " data sets successfully imported");
}
}
private IEnumerable <DataRepository> getObservedDataFromImporter(ImporterConfiguration configuration)
{
var(metaDataCategories, dataImporterSettings) = initializeSettings();
var importedObservedData = _dataImporter.ImportFromConfiguration(
configuration,
metaDataCategories,
_dataImporter.ColumnInfosForObservedData(),
dataImporterSettings,
_dialogCreator.AskForFileToOpen(Captions.Importer.OpenFile, Captions.Importer.ImportFileFilter, DirectoryKey.OBSERVED_DATA)
);
return(importedObservedData);
}
private IEnumerable <DataRepository> getObservedDataFromImporter(ImporterConfiguration configuration, Compound compound, bool promptUser,
bool allowCompoundNameEdit)
{
var(metaDataCategories, dataImporterSettings) = initializeSettings(compound, allowCompoundNameEdit);
dataImporterSettings.PromptForConfirmation = promptUser;
var importedObservedData = _dataImporter.ImportFromConfiguration(
configuration,
metaDataCategories,
_dataImporter.ColumnInfosForObservedData(),
dataImporterSettings,
_dialogCreator.AskForFileToOpen(Captions.Importer.OpenFile, Captions.Importer.ImportFileFilter, Constants.DirectoryKey.OBSERVED_DATA)
);
return(importedObservedData);
}