public static IConsoleAppValidator GetTsvAndIntervalFiles(this IConsoleAppValidator validator, string tsvFilesDirectory, List <string> intermediateFiles, List <string> intervalFiles, List <string> geneTsvFiles, ref string miscFiles)
{
if (!Directory.Exists(tsvFilesDirectory))
{
return(validator);
}
foreach (var file in Directory.GetFiles(tsvFilesDirectory))
{
if (!file.EndsWith(".tsv.gz"))
{
continue;
}
if (file.EndsWith(".interval.tsv.gz"))
{
intervalFiles.Add(file);
continue;
}
if (file.EndsWith(".misc.tsv.gz"))
{
miscFiles = file;
continue;
}
if (file.EndsWith(".gene.tsv.gz"))
{
geneTsvFiles.Add(file);
continue;
}
intermediateFiles.Add(file);
}
return(validator);
}
public static IConsoleAppValidator Enable(this IConsoleAppValidator validator, bool condition, Action method)
{
if (condition)
{
method();
}
return(validator);
}
public static IConsoleAppValidator CheckEachFilenameExists(this IConsoleAppValidator validator,
IEnumerable <string> filePaths, string description, string commandLineOption, bool isRequired = true)
{
foreach (string filePath in filePaths)
{
validator.CheckInputFilenameExists(filePath, description, commandLineOption, isRequired);
}
return(validator);
}
private static ExitCodes Execute(IConsoleAppValidator validator)
{
return(validator
.DisableOutput(true)
.ShowBanner("authors")
.ShowHelpMenu("description", "example")
.ShowErrors()
.Execute(() => ExitCodes.Success));
}
public static IConsoleAppValidator CheckNonZero(this IConsoleAppValidator validator, int num, string description)
{
if (num == 0)
{
validator.Data.AddError(
$"At least one {description} should be provided.",
ExitCodes.MissingCommandLineOption);
}
return(validator);
}
public static IConsoleAppValidator CheckOutputFilenameSuffix(this IConsoleAppValidator validator,
string filePath, string fileSuffix, string description)
{
if (validator.SkipValidation)
{
return(validator);
}
if (!filePath.EndsWith(fileSuffix))
{
validator.Data.AddError($"The {description} file ({filePath}) does not end with a {fileSuffix}.", ExitCodes.BadArguments);
}
return(validator);
}
public static IConsoleAppValidator HasRequiredParameter <T>(this IConsoleAppValidator validator,
T parameterValue, string description, string commandLineOption)
{
if (validator.SkipValidation)
{
return(validator);
}
if (EqualityComparer <T> .Default.Equals(parameterValue, default))
{
validator.Data.AddError($"The {description} was not specified. Please use the {commandLineOption} parameter.",
ExitCodes.MissingCommandLineOption);
}
return(validator);
}
public static IConsoleAppValidator CheckDirectoryExists(this IConsoleAppValidator validator, string dirPath,
string description, string commandLineOption)
{
if (validator.SkipValidation)
{
return(validator);
}
if (string.IsNullOrEmpty(dirPath))
{
validator.Data.AddError(
$"The {description} directory was not specified. Please use the {commandLineOption} parameter.",
ExitCodes.MissingCommandLineOption);
}
else if (!Directory.Exists(dirPath))
{
validator.Data.AddError($"The {description} directory ({dirPath}) does not exist.", ExitCodes.PathNotFound);
}
return(validator);
}
public static IConsoleAppValidator CheckInputFilenameExists(this IConsoleAppValidator validator,
string filePath, string description, string commandLineOption, bool isRequired = true, string ignoreValue = null)
{
if (validator.SkipValidation)
{
return(validator);
}
if (string.IsNullOrEmpty(filePath) && isRequired)
{
validator.Data.AddError(
$"The {description} file was not specified. Please use the {commandLineOption} parameter.",
ExitCodes.MissingCommandLineOption);
}
else if (isRequired && (ignoreValue == null || filePath != ignoreValue) && !File.Exists(filePath) && !CheckUrlExist(filePath))
{
validator.Data.AddError($"The {description} file ({filePath}) does not exist.", ExitCodes.FileNotFound);
}
return(validator);
}
public static IConsoleAppValidator HasRequiredDate(this IConsoleAppValidator validator, string date,
string description, string commandLineOption)
{
if (validator.SkipValidation)
{
return(validator);
}
validator.HasRequiredParameter(date, description, commandLineOption);
if (string.IsNullOrEmpty(date))
{
return(validator);
}
if (!DateTime.TryParse(date, out _))
{
validator.Data.AddError($"The {description} was not specified as a date (YYYY-MM-dd). Please use the {commandLineOption} parameter.", ExitCodes.BadArguments);
}
return(validator);
}
/// <summary>
/// checks if an input directory exists
/// </summary>
public static IConsoleAppValidator CheckEachDirectoryContainsFiles(this IConsoleAppValidator validator,
IEnumerable <string> directories, string description, string commandLineOption, string searchPattern)
{
if (validator.SkipValidation)
{
return(validator);
}
foreach (string directoryPath in directories)
{
var files = Directory.Exists(directoryPath) ? Directory.GetFiles(directoryPath, searchPattern) : null;
if (files != null && files.Length != 0)
{
continue;
}
validator.Data.AddError(
$"The {description} directory ({directoryPath}) does not contain the required files ({searchPattern}). Please use the {commandLineOption} parameter.",
ExitCodes.FileNotFound);
}
return(validator);
}
