private void updatePartialProcessKineticAccordingToTemplate(Compound compound)
{
foreach (var partialProcess in compound.AllProcesses <PartialProcess>().ToList())
{
if (partialProcess.InternalName.Contains("Hill"))
{
continue;
}
//remove the old partial process that needs to be updated
compound.RemoveChild(partialProcess);
var templateProcess = _compoundProcessRepository.All <PartialProcess>().FindByName(partialProcess.InternalName);
bool wasInhibitionProcess = false;
//process does not exist anymore such as Inhibition. convert to non inhibition
if (templateProcess == null)
{
var processInternalName = partialProcess.InternalName.Replace("CompetitiveInhibition_", string.Empty);
templateProcess = _compoundProcessRepository.All <PartialProcess>().FindByName(processInternalName);
wasInhibitionProcess = true;
}
if (templateProcess == null)
{
continue;
}
//This updates all local properites from the parital process such as molecule name etc..
var cloneDbProcess = _cloner.Clone(templateProcess);
cloneDbProcess.UpdatePropertiesFrom(partialProcess, _cloner);
compound.Add(cloneDbProcess);
if (wasInhibitionProcess)
{
cloneDbProcess.Description = PKSimConstants.Warning.StaticInhibitionRemovedFromApplication(templateProcess.Description);
cloneDbProcess.InternalName = templateProcess.InternalName;
}
foreach (var parameter in partialProcess.AllParameters())
{
var newParameter = cloneDbProcess.Parameter(parameter.Name);
if (newParameter == null)
{
continue;
}
//make sure we have the same parameter id as before to ensure smooth update commit
newParameter.Id = parameter.Id;
_parameterSetUpdater.UpdateValue(parameter, newParameter);
//this needs to be done after udpdate value as the Update value also sets the origin
newParameter.Origin.ParameterId = parameter.Origin.ParameterId;
}
}
}
private IEnumerable <TCompoundProcess> allProcessTemplates <TCompoundProcess>() where TCompoundProcess : CompoundProcess
{
return(_compoundProcessRepository.All <TCompoundProcess>());
}