/// <summary> /// group files based on three items: Ion polarity, fragmentor voltage and storage type. /// </summary> /// <param name="dataAccess"></param> /// <param name="ionPolarity"></param> /// <param name="fragmentorVoltage"></param> /// <returns></returns> private DesiredMSStorageType GetStorageType(IDataAccess dataAccess, IonPolarity ionPolarity, double fragmentorVoltage) { DesiredMSStorageType storageModeToUse; IMSChromatogram chromatogram; bool requiresTofData = true; IBDAFileInformation fileInfo = dataAccess.FileInformation; if (fileInfo.MSScanFileInformation.DeviceType == DeviceType.Quadrupole) { requiresTofData = false; } storageModeToUse = FindCpdsUtilities.GetStorageTypeToUse(dataAccess, ionPolarity, requiresTofData, MSLevel.MS, fragmentorVoltage, out chromatogram); return(storageModeToUse); }
private List <IonPolarity> GetScanIonPolarities(IDataAccess dataAccess) { List <IonPolarity> rv = new List <IonPolarity>(); IonPolarity polaritiesInFile = IonPolarity.Unassigned; IBDAFileInformation fileInfo = dataAccess.FileInformation; if (fileInfo.IsMSDataPresent()) { IBDAMSScanFileInformation msInfo = fileInfo.MSScanFileInformation; IBDAMSScanTypeInformation scanInfo = msInfo.GetMSScanTypeInformation(MSScanType.Scan); if (scanInfo != null) { polaritiesInFile = scanInfo.IonPolarities; } } if (polaritiesInFile == IonPolarity.Unassigned) { UserMessage msg = new UserMessage(0, string.Empty, ProgramModule.CoreFacades, DACoreFacadeMessages.MSG_MFE_NoMsScanData); throw new MSDAApplicationException(msg as IUserMessage); } switch (polaritiesInFile) { case IonPolarity.Mixed: rv.Add(IonPolarity.Positive); rv.Add(IonPolarity.Negative); break; case IonPolarity.Positive: rv.Add(IonPolarity.Positive); break; case IonPolarity.Negative: rv.Add(IonPolarity.Negative); break; default: break; } return(rv); }
private bool IsGCData() { bool bRet = false; if (m_analyses.Count() > 0) { var analysis = m_analyses[0]; if (analysis.DataAccess != null) { IBDAFileInformation fileInfo = analysis.DataAccess.FileInformation; if (fileInfo.MSScanFileInformation.IonModes == IonizationMode.EI) { bRet = true; } } } return(bRet); }
private void PrintFileInfo(IMsdrDataReader dataAccess) { IBDAFileInformation fileInfo = dataAccess.FileInformation; println("Data File: " + fileInfo.DataFileName); println("Acquisition Time: " + fileInfo.AcquisitionTime.ToShortDateString()); println("IRM Status: " + fileInfo.IRMStatus); println("Measurement Type: " + fileInfo.MeasurementType); println("Separation Technique: " + fileInfo.SeparationTechnique); print("MS Data Present: "); if (fileInfo.IsMSDataPresent()) { println("yes"); } else { println("no"); } print("Non-MS data present: "); if (fileInfo.IsNonMSDataPresent()) { println("yes"); } else { println("no"); } print("UV spectra present: "); if (fileInfo.IsUVSpectralDataPresent()) { println("yes"); } else { println("no"); } }