public Hgnc Clone()
{
var newGenes = new HgncGene[HgncGenes.Length];
for (var i = 0; i < HgncGenes.Length; i++)
{
newGenes[i] = HgncGenes[i].Clone();
}
return(new Hgnc(newGenes, HgncIdToSymbol));
}
private static void AddCoordinatesFromMultipleGenes(HgncGene hgncGene, EnsemblGene ensemblGene, IEnumerable <RefSeqGene> refSeqGenes)
{
if (ensemblGene == null)
{
return;
}
AddCoordinatesFromGene(hgncGene, ensemblGene);
foreach (var refSeqGene in refSeqGenes)
{
if (!IntervalUtilities.Overlaps(hgncGene.Start, hgncGene.End, refSeqGene.Start, refSeqGene.End))
{
continue;
}
AddCoordinatesFromGene(hgncGene, refSeqGene);
}
}
private static void AddCoordinatesFromGene <T>(HgncGene hgncGene, IFlatGene <T> flatGene) where T : IFlatGene <T>
{
hgncGene.Start = hgncGene.Start == -1 ? flatGene.Start : Math.Min(hgncGene.Start, flatGene.Start);
hgncGene.End = hgncGene.End == -1 ? flatGene.End : Math.Max(hgncGene.End, flatGene.End);
}
