public Di4B(string workingDirectory, string sectionTitle, Memory Memory, HDDPerformance hddPerformance, IndexType indexType, CacheOptions cacheOptions, ISerializer <C> CSerializer, IComparer <C> CComparer)
{
this.CSerializer = CSerializer;
this.CComparer = CComparer;
genome = new Genome <C, I, M>(workingDirectory, sectionTitle, Memory, hddPerformance, indexType, cacheOptions, CSerializer, CComparer);
}
public Genome(
string workingDirectory,
string sectionTitle,
Memory memory,
HDDPerformance hddPerformance,
IndexType indexType,
CacheOptions cacheOptions,
ISerializer <C> CSerializer,
IComparer <C> CComparer)
{
_memory = memory;
_hddPerformance = hddPerformance;
_CSerializer = CSerializer;
_CComparer = CComparer;
_sectionTitle = sectionTitle;
_cacheOptions = cacheOptions;
_indexType = indexType;
_stpWtch = new Stopwatch();
_config = ConfigurationManager.OpenExeConfiguration(ConfigurationUserLevel.None);
_settings = ConfigurationManager.OpenExeConfiguration(ConfigurationUserLevel.None).AppSettings.Settings;
if (_memory == Memory.RAM)
{
chrs = new Dictionary <string, Dictionary <char, Di4 <C, I, M> > >();
}
else if (_memory == Memory.HDD && _hddPerformance == HDDPerformance.Fastest)
{
chrs = new Dictionary <string, Dictionary <char, Di4 <C, I, M> > >();
_chrSection = (ChrSection)ConfigurationManager.GetSection(_sectionTitle);
if (_chrSection == null)
{
_chrSection = new ChrSection();
}
ConfigurationManager.RefreshSection(_sectionTitle);
foreach (ChrConfigElement element in _chrSection.genomeChrs)
{
if (!chrs.ContainsKey(element.chr))
{
chrs.Add(element.chr, new Dictionary <char, Di4 <C, I, M> >());
}
if (!chrs[element.chr].ContainsKey(element.strand))
{
chrs[element.chr].Add(element.strand, new Di4 <C, I, M>(GetDi4Options(element.index)));
}
}
}
}
