public void EdnaScorer()
{
var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams());
var recursor = new SparseSseEdnaRecursor((int) Move.ALL_MOVES, new BandingOptions(0, 10));
var scorer = new SparseSseEdnaMutationScorer(eval, recursor);
scorer.ScoreMutation(MutationType.INSERTION, 3, 'A');
var counter = new EdnaCounts();
var intFeature = new IntFeature(10);
var resultArray = new FloatArray(5);
counter.DoCount(intFeature, eval, scorer, 3,4, resultArray.cast());
}
public void EdnaScorer()
{
var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams());
var recursor = new SparseSseEdnaRecursor((int)Move.ALL_MOVES, new BandingOptions(0, 10));
var scorer = new SparseSseEdnaMutationScorer(eval, recursor);
scorer.ScoreMutation(MutationType.INSERTION, 3, 'A');
var counter = new EdnaCounts();
var intFeature = new IntFeature(10);
var resultArray = new FloatArray(5);
counter.DoCount(intFeature, eval, scorer, 3, 4, resultArray.cast());
}
