public override IEnumerable <DocNode> GetChoices(bool useFilter)
{
var mods = DocNode.ExplicitMods;
var listChildrenNew = new List <DocNode>();
foreach (TransitionGroup group in DocNode.GetTransitionGroups(DocSettings, mods, useFilter))
{
// The maximum allowable precursor charge may be larger than it makes sense to show.
var charges = group.IsProteomic
? DocSettings.TransitionSettings.Filter.PeptidePrecursorCharges
: DocSettings.TransitionSettings.Filter.SmallMoleculePrecursorAdducts;
if (Math.Abs(group.PrecursorAdduct.AdductCharge) <= TransitionGroup.MAX_PRECURSOR_CHARGE_PICK || charges.Contains(group.PrecursorAdduct))
{
var nodeChoice = CreateChoice(group, mods);
if (!useFilter || DocSettings.TransitionSettings.Libraries.HasMinIonCount(nodeChoice))
{
listChildrenNew.Add(nodeChoice);
}
}
}
var nodePep = (PeptideDocNode)DocNode.ChangeChildren(listChildrenNew);
nodePep.ChangeSettings(DocSettings, SrmSettingsDiff.PROPS);
listChildrenNew = new List <DocNode>(nodePep.Children);
MergeChosen(listChildrenNew, useFilter);
return(listChildrenNew);
}
public override IEnumerable <DocNode> GetChoices(bool useFilter)
{
var mods = DocNode.ExplicitMods;
var listChildrenNew = new List <DocNode>();
foreach (TransitionGroup group in DocNode.GetTransitionGroups(DocSettings, mods, useFilter))
{
// The maximum allowable precursor charge may be larger than it makes sense to show
// For custom ions we just show what's already there, so don't worry about charge
if (group.IsCustomIon || Math.Abs(group.PrecursorCharge) <= TransitionGroup.MAX_PRECURSOR_CHARGE_PICK ||
DocSettings.TransitionSettings.Filter.PrecursorCharges.Contains(group.PrecursorCharge))
{
listChildrenNew.Add(CreateChoice(group, mods));
}
}
var nodePep = (PeptideDocNode)DocNode.ChangeChildren(listChildrenNew);
nodePep.ChangeSettings(DocSettings, SrmSettingsDiff.PROPS);
listChildrenNew = new List <DocNode>(nodePep.Children);
MergeChosen(listChildrenNew, useFilter);
return(listChildrenNew);
}
