protected override string GetOriginFile()
{
DistributionOption option = GetDistributionOption();
FileInfo fi = new FileInfo(option.SourceFileName);
string targetDir = MyConvert.Format(@"{0}\{1}_{2}_CLASSIFICATION",
fi.DirectoryName,
option.DistributionType,
option.ClassificationPrinciple);
if (!Directory.Exists(targetDir))
{
Directory.CreateDirectory(targetDir);
}
string result = MyConvert.Format(@"{0}\{1}.{2}_{3}.statistic.xml",
targetDir,
fi.Name,
option.DistributionType,
option.ClassificationPrinciple);
new DistributionOptionXmlFormat().WriteToFile(result, option);
return(result);
}
public void TestGetClassifiedNames()
{
DistributionOption option = new DistributionOption();
option.ClassificationSet["A"] = new List<string> (new string[]{"1","2","3"});
option.ClassificationSet["B"] = new List<string> (new string[]{"4","5","6"});
string[] actual = option.GetClassifiedNames();
Assert.AreEqual(new string[] { "A", "B" }, actual);
}
protected override IFileProcessor GetFileProcessor()
{
DistributionOption option = GetDistributionOption();
if (option.ModifiedPeptideOnly)
{
return(new ModifiedPeptideDistributionCalculator(option.ModifiedPeptide, true));
}
else
{
return(new PeptideDistributionCalculator(true));
}
}
protected DistributionOption GetDistributionOption()
{
DistributionOption option = new DistributionOption()
{
ClassificationPrinciple = classificationTitle.Text,
ClassificationSet = GetClassificationSet(),
DistributionType = GetDistributionType(),
FilterFrom = loopFrom.Value,
FilterTo = loopTo.Value,
FilterStep = loopStep.Value,
FilterType = filterType.SelectedItem,
ModifiedPeptideOnly = modifiedOnly.Checked,
ModifiedPeptide = modifiedAminoacids.Text,
SourceFileName = sourceFile.FullName,
ClassifiedByTag = cbClassifiedByTag.Checked
};
return(option);
}
