/// <summary>
/// Creates an instance of <see cref="UpdateSeriesCommand"/> to update the existing Series record in the database
/// </summary>
public UpdateSeriesCommand(StudyStorageLocation storageLocation, ServerActionContext sopContext)
: base(String.Concat("Update Series Command"))
{
_storageLocation = storageLocation;
_data = sopContext.Message.DataSet;
_context = sopContext;
}
public void AssertTagValueChanged(uint tag, string valueToSet, string originalCharacterSet, string expectedNewCharacterSet)
{
DicomAttributeCollection dataset = new DicomAttributeCollection();
SetupDataSet(dataset, originalCharacterSet);
DicomFile file = new DicomFile("test", CreateMetaInfo(), dataset);
Assert.AreEqual(originalCharacterSet, file.DataSet[DicomTags.SpecificCharacterSet].ToString());
SetTagCommand cmd = new SetTagCommand(tag, valueToSet);
Assert.AreEqual(cmd.CanSaveInUnicode, UnicodeAllowed, "SetTagCommand.CanSaveInUnicode returns an incorrect value");
Assert.IsTrue(cmd.Apply(file), "SetTagCommand.Apply failed");
var filename = string.Format("Test-{0}.dcm", DicomTagDictionary.GetDicomTag(tag).Name);
Assert.IsTrue(file.Save(filename), "Unable to save dicom file");
file = new DicomFile(filename);
file.Load();
if (valueToSet == null)
Assert.AreEqual(string.Empty, file.DataSet[tag].ToString());
else
Assert.AreEqual(valueToSet, file.DataSet[tag].ToString());
Assert.IsTrue(file.DataSet[DicomTags.SpecificCharacterSet].ToString().Equals(expectedNewCharacterSet));
Delete(filename);
}
public void TestFormatNil()
{
var dataset = new DicomAttributeCollection();
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null), "1");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null, false), "2");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription), "3");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription, false), "4");
dataset[DicomTags.PatientBreedCodeSequence].SetNullValue();
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null), "5");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null, false), "6");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription), "7");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription, false), "8");
dataset[DicomTags.PatientBreedDescription].SetNullValue();
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null), "9");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null, false), "10");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription), "11");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription, false), "12");
dataset[DicomTags.PatientBreedCodeSequence].SetEmptyValue();
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null), "13");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, null, false), "14");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription), "15");
Assert.IsEmpty(CodeSequenceAnnotationItem.FormatCodeSequence(dataset, DicomTags.PatientBreedCodeSequence, DicomTags.PatientBreedDescription, false), "16");
}
public void OBAttributeOddLengthTests()
{
using(var ms = new MemoryStream())
{
var writer = new DicomStreamWriter(ms);
var ds = new DicomAttributeCollection();
var rawdata = new byte[] {0x0, 0x1, 0x2};
ds[DicomTags.EncapsulatedDocument].Values = rawdata;
writer.Write(TransferSyntax.ImplicitVrLittleEndian, ds, DicomWriteOptions.Default);
ms.Position = 0;
var output = ms.ToArray();
var expectedOutput = new byte[]
{
0x42, 0x00, 0x11, 0x00,
0x04, 0x00, 0x00, 0x00,
0x0, 0x1, 0x2, 0x0 /* pad */
};
Assert.AreEqual(output, expectedOutput);
}
}
private void _queryButton_Click(object sender, EventArgs e)
{
var scu = new StudyRootFindScu();
var query = new DicomAttributeCollection();
scu.AssociationRejected += scu_AssociationRejected;
scu.AssociationAccepted += scu_AssociationAccepted;
scu.AssociationReleased += scu_AssociationReleased;
scu.AssociationAborted += scu_AssociationAborted;
scu.NetworkError += scu_NetworkError;
query[DicomTags.QueryRetrieveLevel].SetStringValue("STUDY");
query[DicomTags.PatientId].SetStringValue("");
query[DicomTags.PatientsName].SetStringValue("");
query[DicomTags.AccessionNumber].SetStringValue("");
query[DicomTags.StudyDescription].SetStringValue("");
query[DicomTags.StudyDate].SetStringValue("");
query[DicomTags.StudyInstanceUid].SetStringValue("");
if (_studyDateTextBox.Text != "")
{
query[DicomTags.StudyDate].SetStringValue(_studyDateTextBox.Text +"-" + DateTime.Today.ToString("yyyyMMdd"));
}
_results = null;
_results = scu.Find(_aeTitleTextbox.Text, _calledAETitleTextbox.Text, _hostnameTextbox.Text, int.Parse(_portTextbox.Text), query);
scu.Dispose();
}
public void TestIsValidMultiFrameOverlay()
{
const int size = 3;
var dataset = new DicomAttributeCollection();
SetOverlay(dataset, 0, new bool[size*size], OverlayType.R, new Point(0, 0), size, size, null, false, false);
SetOverlay(dataset, 1, new bool[size*size], OverlayType.R, new Point(0, 0), size, size, 1, false, false);
SetOverlay(dataset, 2, new bool[size*size*5], OverlayType.R, new Point(0, 0), size, size, 5, false, false);
SetOverlay(dataset, 3, new bool[size*size], OverlayType.R, new Point(0, 0), size, size, 1, 3, false, false);
SetOverlay(dataset, 4, new bool[size*size*5], OverlayType.R, new Point(0, 0), size, size, 5, 2, false, false);
var module = new OverlayPlaneModuleIod(dataset);
Assert.IsTrue(module[0].IsValidMultiFrameOverlay(1), "Single Frame Overlay / 1 Frame in Image");
Assert.IsTrue(module[0].IsValidMultiFrameOverlay(2), "Single Frame Overlay / 2 Frames in Image");
Assert.IsTrue(module[1].IsValidMultiFrameOverlay(1), "1 Frame in Overlay (origin null==1) / 1 Frame in Image");
Assert.IsTrue(module[1].IsValidMultiFrameOverlay(2), "1 Frame in Overlay (origin null==1) / 2 Frames in Image");
Assert.IsFalse(module[2].IsValidMultiFrameOverlay(4), "5 Frames in Overlay (origin null==1) / 4 Frames in Image");
Assert.IsTrue(module[2].IsValidMultiFrameOverlay(5), "5 Frames in Overlay (origin null==1) / 5 Frames in Image");
Assert.IsTrue(module[2].IsValidMultiFrameOverlay(6), "5 Frames in Overlay (origin null==1) / 6 Frames in Image");
Assert.IsFalse(module[3].IsValidMultiFrameOverlay(2), "1 Frames in Overlay (origin 3) / 2 Frames in Image");
Assert.IsTrue(module[3].IsValidMultiFrameOverlay(3), "1 Frames in Overlay (origin 3) / 3 Frames in Image");
Assert.IsTrue(module[3].IsValidMultiFrameOverlay(4), "1 Frames in Overlay (origin 3) / 4 Frames in Image");
Assert.IsFalse(module[4].IsValidMultiFrameOverlay(5), "5 Frames in Overlay (origin 2) / 5 Frames in Image");
Assert.IsTrue(module[4].IsValidMultiFrameOverlay(6), "5 Frames in Overlay (origin 2) / 6 Frames in Image");
Assert.IsTrue(module[4].IsValidMultiFrameOverlay(7), "5 Frames in Overlay (origin 2) / 7 Frames in Image");
}
public void SetupMRWithUNVR(DicomAttributeCollection theSet)
{
SetupMR(theSet);
theSet[DicomTags.LossyImageCompressionMethod].SetStringValue("ISO_15444_1");
ConvertAttributeToUN(theSet, DicomTags.LossyImageCompressionMethod);
}
public void SelectAllSeries()
{
Study study = CreateTestStudy1();
var criteria = new DicomAttributeCollection();
var filters = new SeriesPropertyFilters(criteria);
var results = filters.FilterResults(study.GetSeries().Cast<Series>());
Assert.AreEqual(4, results.Count());
}
/// <summary>
/// Constructs a new <see cref="PatientNode"/> using actual values from attributes in the given <see cref="DicomAttributeCollection"/>.
/// </summary>
/// <param name="dicomDataSet">The data set from which to initialize this node.</param>
public PatientNode(DicomAttributeCollection dicomDataSet)
{
_studies = new StudyNodeCollection(this);
_patientId = dicomDataSet[DicomTags.PatientId].GetString(0, "");
_name = dicomDataSet[DicomTags.PatientsName].GetString(0, "");
_birthdate = DicomConverter.GetDateTime(dicomDataSet[DicomTags.PatientsBirthDate].GetDateTime(0), dicomDataSet[DicomTags.PatientsBirthTime].GetDateTime(0));
_sex = DicomConverter.GetSex(dicomDataSet[DicomTags.PatientsSex].GetString(0, ""));
}
public PixelDataInfo(DicomAttributeCollection dataset)
{
dataset.LoadDicomFields(this);
AspectRatio = PixelAspectRatio.FromString(dataset[DicomTags.PixelAspectRatio].ToString()) ?? new PixelAspectRatio(0, 0);
PixelSpacing = PixelSpacing.FromString(dataset[DicomTags.PixelSpacing].ToString()) ?? new PixelSpacing(0, 0);
ImagerPixelSpacing = PixelSpacing.FromString(dataset[DicomTags.ImagerPixelSpacing].ToString()) ?? new PixelSpacing(0, 0);
}
public IList<DicomAttributeCollection> SetupMRSeries(int seriesCount, int instancesPerSeries, string studyInstanceUid)
{
List<DicomAttributeCollection> instanceList = new List<DicomAttributeCollection>();
DicomAttributeCollection baseCollection = new DicomAttributeCollection();
SetupMR(baseCollection);
baseCollection[DicomTags.StudyInstanceUid].SetStringValue(studyInstanceUid);
int acquisitionNumber = 1;
int instanceNumber = 100;
float positionX = -61.7564f;
float positionY = -212.04848f;
float positionZ = -99.6208f;
float orientation1 = 0.861f;
float orientation2 = 0.492f;
float orientation3 = 0.126f;
float orientation4 = -0.2965f;
for (int i = 0; i < seriesCount; i++)
{
string seriesInstanceUid = DicomUid.GenerateUid().UID;
for (int j = 0; j < instancesPerSeries; j++)
{
string sopInstanceUid = DicomUid.GenerateUid().UID;
DicomAttributeCollection instanceCollection = baseCollection.Copy();
instanceCollection[DicomTags.SopInstanceUid].SetStringValue(sopInstanceUid);
instanceCollection[DicomTags.SeriesInstanceUid].SetStringValue(seriesInstanceUid);
instanceCollection[DicomTags.SeriesNumber].SetStringValue((i + 1).ToString());
instanceCollection[DicomTags.SeriesDescription].SetStringValue("Series" + (i + 1).ToString());
instanceCollection[DicomTags.AcquisitionNumber].SetStringValue(acquisitionNumber++.ToString());
instanceCollection[DicomTags.InstanceNumber].SetStringValue(instanceNumber++.ToString());
instanceCollection[DicomTags.ImagePositionPatient].SetFloat32(0, positionX);
instanceCollection[DicomTags.ImagePositionPatient].SetFloat32(1, positionY);
instanceCollection[DicomTags.ImagePositionPatient].SetFloat32(2, positionZ);
positionY += 0.1f;
instanceCollection[DicomTags.ImageOrientationPatient].SetFloat32(0, orientation1);
instanceCollection[DicomTags.ImageOrientationPatient].SetFloat32(1, orientation2);
instanceCollection[DicomTags.ImageOrientationPatient].SetFloat32(2, orientation3);
instanceCollection[DicomTags.ImageOrientationPatient].SetFloat32(2, orientation4);
orientation2 += 0.01f;
instanceList.Add(instanceCollection);
}
}
return instanceList;
}
public void SelectBySeriesUid_Multiple()
{
Study study = CreateTestStudy1();
var criteria = new DicomAttributeCollection();
criteria[DicomTags.SeriesInstanceUid].SetStringValue("1.2.3.2\\1.2.3.3");
var filters = new SeriesPropertyFilters(criteria);
var results = filters.FilterResults(study.GetSeries().Cast<Series>());
Assert.AreEqual(2, results.Count());
}
/// <summary>
/// Populate at the IMAGE level a response message.
/// </summary>
/// <param name="request"></param>
/// <param name="response"></param>
/// <param name="tagList"></param>
/// <param name="theInstanceStream"></param>
private void PopulateInstance(DicomAttributeCollection request, DicomMessage response, List<uint> tagList,
InstanceXml theInstanceStream)
{
DicomAttributeCollection dataSet = response.DataSet;
dataSet[DicomTags.RetrieveAeTitle].SetStringValue(Partition.AeTitle);
dataSet[DicomTags.InstanceAvailability].SetStringValue("ONLINE");
DicomAttributeCollection sourceDataSet = theInstanceStream.Collection;
if (false == sourceDataSet.Contains(DicomTags.SpecificCharacterSet))
{
dataSet[DicomTags.SpecificCharacterSet].SetStringValue(sourceDataSet[DicomTags.SpecificCharacterSet].ToString());
dataSet.SpecificCharacterSet = sourceDataSet[DicomTags.SpecificCharacterSet].ToString(); // this will ensure the data is encoded using the specified character set
}
foreach (uint tag in tagList)
{
try
{
switch (tag)
{
case DicomTags.PatientId:
dataSet[DicomTags.PatientId].SetStringValue(request[DicomTags.PatientId].ToString());
break;
case DicomTags.StudyInstanceUid:
dataSet[DicomTags.StudyInstanceUid].SetStringValue(
request[DicomTags.StudyInstanceUid].ToString());
break;
case DicomTags.SeriesInstanceUid:
dataSet[DicomTags.SeriesInstanceUid].SetStringValue(
request[DicomTags.SeriesInstanceUid].ToString());
break;
case DicomTags.QueryRetrieveLevel:
dataSet[DicomTags.QueryRetrieveLevel].SetStringValue("IMAGE");
break;
default:
if (sourceDataSet.Contains(tag))
dataSet[tag] = sourceDataSet[tag].Copy();
else
dataSet[tag].SetNullValue();
break;
// Meta tags that should have not been in the RQ, but we've already set
case DicomTags.RetrieveAeTitle:
case DicomTags.InstanceAvailability:
case DicomTags.SpecificCharacterSet:
break;
}
}
catch (Exception e)
{
Platform.Log(LogLevel.Warn, e, "Unexpected error setting tag {0} in C-FIND-RSP",
dataSet[tag].Tag.ToString());
dataSet[tag].SetNullValue();
}
}
}
/// <summary>
/// Update an <see cref="DicomAttributeCollection"/> with pixel data related tags.
/// </summary>
/// <param name="dataset">The collection to update.</param>
public override void UpdateAttributeCollection(DicomAttributeCollection dataset)
{
if (dataset.Contains(DicomTags.NumberOfFrames) || NumberOfFrames > 1)
dataset[DicomTags.NumberOfFrames].SetInt32(0, NumberOfFrames);
if (dataset.Contains(DicomTags.PlanarConfiguration))
dataset[DicomTags.PlanarConfiguration].SetInt32(0, PlanarConfiguration);
if (dataset.Contains(DicomTags.LossyImageCompression) || LossyImageCompression.Length > 0)
dataset[DicomTags.LossyImageCompression].SetString(0, LossyImageCompression);
if (dataset.Contains(DicomTags.LossyImageCompressionRatio) || (LossyImageCompressionRatio != 1.0f && LossyImageCompressionRatio != 0.0f))
dataset[DicomTags.LossyImageCompressionRatio].SetFloat32(0, LossyImageCompressionRatio);
if (dataset.Contains(DicomTags.LossyImageCompressionMethod) || LossyImageCompressionMethod.Length > 0)
dataset[DicomTags.LossyImageCompressionMethod].SetString(0, LossyImageCompressionMethod);
if (dataset.Contains(DicomTags.DerivationDescription) || DerivationDescription.Length > 0)
{
string currentValue = dataset[DicomTags.DerivationDescription].ToString();
dataset[DicomTags.DerivationDescription].SetStringValue(DerivationDescription);
if (!currentValue.Equals(DerivationDescription))
{
DicomSequenceItem item = new DicomSequenceItem();
CodeSequenceMacro macro = new CodeSequenceMacro(item);
macro.CodeMeaning = "Lossy Compression";
macro.CodeValue = "113040";
macro.CodingSchemeDesignator = "DCM";
macro.ContextGroupVersion = new DateTime(2005, 8, 22);
macro.ContextIdentifier = "7203";
macro.MappingResource = "DCMR";
dataset[DicomTags.DerivationCodeSequence].AddSequenceItem(item);
}
}
if (dataset.Contains(DicomTags.RescaleSlope) || DecimalRescaleSlope != 1.0M || DecimalRescaleIntercept != 0.0M)
dataset[DicomTags.RescaleSlope].SetString(0, RescaleSlope);
if (dataset.Contains(DicomTags.RescaleIntercept) || DecimalRescaleSlope != 1.0M || DecimalRescaleIntercept != 0.0M)
dataset[DicomTags.RescaleIntercept].SetString(0, RescaleIntercept);
if (dataset.Contains(DicomTags.WindowCenter) || LinearVoiLuts.Count > 0)
Window.SetWindowCenterAndWidth(dataset, LinearVoiLuts);
//Remove the palette color lut, if the pixels were translated to RGB
if (dataset.Contains(DicomTags.RedPaletteColorLookupTableData)
&& dataset.Contains(DicomTags.BluePaletteColorLookupTableData)
&& dataset.Contains(DicomTags.GreenPaletteColorLookupTableData)
&& !HasPaletteColorLut)
{
dataset.RemoveAttribute(DicomTags.BluePaletteColorLookupTableDescriptor);
dataset.RemoveAttribute(DicomTags.BluePaletteColorLookupTableData);
dataset.RemoveAttribute(DicomTags.RedPaletteColorLookupTableDescriptor);
dataset.RemoveAttribute(DicomTags.RedPaletteColorLookupTableData);
dataset.RemoveAttribute(DicomTags.GreenPaletteColorLookupTableDescriptor);
dataset.RemoveAttribute(DicomTags.GreenPaletteColorLookupTableData);
}
dataset.SaveDicomFields(this);
dataset[DicomTags.PixelData] = _sq;
}
public void SelectAllSops()
{
Study study = CreateTestStudy1();
var sops = study.GetSeries().First().GetSopInstances().Cast<SopInstance>().ToList();
var criteria = new DicomAttributeCollection();
var filters = new SopInstancePropertyFilters(criteria);
var results = filters.FilterResults(sops);
Assert.AreEqual(5, results.Count());
}
public void SelectBySeriesDescription_Equals()
{
Study study = CreateTestStudy1();
var criteria = new DicomAttributeCollection();
criteria[DicomTags.SeriesDescription].SetString(0, "Series1");
var filters = new SeriesPropertyFilters(criteria);
var results = filters.FilterResults(study.GetSeries().Cast<Series>());
Assert.AreEqual(1, results.Count());
}
public void TestDicomTagPathGetAttribute_NoCreate()
{
var collection = new DicomAttributeCollection();
var path = new DicomTagPath(DicomTags.PatientId);
//PatientID IS empty
Assert.IsNull(path.GetAttribute(collection));
collection[DicomTags.PatientId].SetNullValue();
//PatientID NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
collection[DicomTags.PatientId].SetStringValue("PatientId");
collection[DicomTags.PatientsName].SetStringValue("PatientsName");
//PatientID NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
path = new DicomTagPath(DicomTags.PatientsName);
//PatientsName NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
//ViewCodeSequence IS empty
path = new DicomTagPath(DicomTags.ViewCodeSequence);
Assert.IsNull(path.GetAttribute(collection));
var sequence1 = new DicomSequenceItem();
collection[DicomTags.ViewCodeSequence].AddSequenceItem(sequence1);
//ViewCodeSequence NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
path += DicomTags.CodeMeaning;
//ViewCodeSequence/CodeMeaning IS empty
Assert.IsNull(path.GetAttribute(collection));
sequence1[DicomTags.CodeMeaning].SetNullValue();
//ViewCodeSequence/CodeMeaning NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
//ViewCodeSequence/ConceptNameCodeSequence IS empty
path = new DicomTagPath(DicomTags.ViewCodeSequence, DicomTags.ConceptNameCodeSequence);
Assert.IsNull(path.GetAttribute(collection));
var sequence2 = new DicomSequenceItem();
sequence1[DicomTags.ConceptNameCodeSequence].AddSequenceItem(sequence2);
//ViewCodeSequence/ConceptNameCodeSequence NOT empty
Assert.IsNotNull(path.GetAttribute(collection));
path += DicomTags.CodeValue;
//ViewCodeSequence/ConceptNameCodeSequence/CodeValue IS empty
Assert.IsNull(path.GetAttribute(collection));
sequence2[DicomTags.CodeValue].SetStringValue("Code");
//ViewCodeSequence/ConceptNameCodeSequence/CodeValue IS empty
Assert.IsNotNull(path.GetAttribute(collection));
}
/// <summary>
/// Constructs a new <see cref="StudyNode"/> using actual values from attributes in the given <see cref="DicomAttributeCollection"/>.
/// </summary>
/// <param name="dicomDataSet">The data set from which to initialize this node.</param>
public StudyNode(DicomAttributeCollection dicomDataSet)
{
_series = new SeriesNodeCollection(this);
_studyId = dicomDataSet[DicomTags.StudyId].GetString(0, "");
_description = dicomDataSet[DicomTags.StudyDescription].GetString(0, "");
_dateTime = DicomConverter.GetDateTime(dicomDataSet[DicomTags.StudyDate].GetDateTime(0), dicomDataSet[DicomTags.StudyTime].GetDateTime(0));
_accessionNum = dicomDataSet[DicomTags.AccessionNumber].GetString(0, "");
_instanceUid = dicomDataSet[DicomTags.StudyInstanceUid].GetString(0, "");
if (_instanceUid == "")
_instanceUid = StudyBuilder.NewUid();
}
/// <summary>
/// Constructs a new <see cref="SeriesNode"/> using actual values from attributes from the given <see cref="DicomAttributeCollection"/>.
/// </summary>
/// <param name="dicomDataSet">The data set from which to initialize this node.</param>
public SeriesNode(DicomAttributeCollection dicomDataSet)
{
_images = new SopInstanceNodeCollection(this);
_description = dicomDataSet[DicomTags.SeriesDescription].GetString(0, "");
_dateTime =
DicomConverter.GetDateTime(dicomDataSet[DicomTags.SeriesDate].GetDateTime(0),
dicomDataSet[DicomTags.SeriesTime].GetDateTime(0));
_instanceUid = dicomDataSet[DicomTags.SeriesInstanceUid].GetString(0, "");
if (_instanceUid == "")
_instanceUid = StudyBuilder.NewUid();
}
/// <summary>
/// Writes the data in this node into the given <see cref="DicomAttributeCollection"/>.
/// </summary>
/// <param name="dataSet">The data set to write data into.</param>
/// <param name="writeUid"></param>
internal void Update(DicomAttributeCollection dataSet, bool writeUid)
{
int imageNumber = 0;
if (this.Parent != null)
imageNumber = this.Parent.Images.IndexOf(this) + 1;
DicomConverter.SetInt32(dataSet[DicomTags.InstanceNumber], imageNumber);
if (writeUid)
dataSet[DicomTags.SopInstanceUid].SetStringValue(_instanceUid);
}
/// <summary>
/// Create a new empty DICOM Part 10 format file.
/// </summary>
/// <param name="filename"></param>
public DicomFile(String filename)
{
MetaInfo = new DicomAttributeCollection(0x00020000, 0x0002FFFF);
DataSet = new DicomAttributeCollection(0x00040000, 0xFFFFFFFF);
ImplementationVersionName = DicomImplementation.Version;
ImplementationClassUid = DicomImplementation.ClassUID.UID;
MetaInfo[DicomTags.TransferSyntaxUid].SetStringValue(TransferSyntax.ExplicitVrLittleEndian.UidString);
MetaInfo[DicomTags.FileMetaInformationVersion].Values = new byte[] { 0x00, 0x01 };
_filename = filename;
}
/// <summary>
/// Initializes a new <see cref="ISopDataSource"/> for the given volume slice.
/// </summary>
/// <param name="slice">A volume slice. This instance will be disposed when the <see cref="VolumeSliceSopDataSource"/> instance is disposed.</param>
public AsyncVolumeSliceSopDataSource(VolumeSlice slice)
{
Slice = slice;
DataSet = new DicomAttributeCollection();
DataSet[DicomTags.Rows].SetInt32(0, Slice.Rows);
DataSet[DicomTags.Columns].SetInt32(0, Slice.Colums);
DataSet[DicomTags.NumberOfFrames].SetInt32(0, 1);
DataSet[DicomTags.ImageOrientationPatient].SetStringValue(Slice.ImageOrientationPatient);
DataSet[DicomTags.ImagePositionPatient].SetStringValue(Slice.ImagePositionPatient);
DataSet[DicomTags.SopInstanceUid].SetString(0, DicomUid.GenerateUid().UID);
}
private ImageSop CreateImageSop(string patientId, string studyUid, string seriesUid, string sopUid)
{
DicomAttributeCollection dataSet = new DicomAttributeCollection();
base.SetupMR(dataSet);
DicomFile file = new DicomFile(null, new DicomAttributeCollection(), dataSet);
TestDataSource dataSource = new TestDataSource(file);
file.DataSet[DicomTags.PatientId].SetStringValue(patientId);
file.DataSet[DicomTags.StudyInstanceUid].SetStringValue(studyUid);
file.DataSet[DicomTags.SeriesInstanceUid].SetStringValue(seriesUid);
file.DataSet[DicomTags.SopInstanceUid].SetStringValue(sopUid);
return new ImageSop(dataSource);
}
public void ConvertAttributeToUN(DicomAttributeCollection theSet, uint tag)
{
ByteBuffer theData =
theSet[tag].GetByteBuffer(TransferSyntax.ImplicitVrLittleEndian,
theSet.SpecificCharacterSet);
DicomTag baseTag = DicomTagDictionary.GetDicomTag(tag);
DicomTag theTag = new DicomTag(tag,
baseTag.Name, baseTag.VariableName, DicomVr.UNvr, baseTag.MultiVR, baseTag.VMLow, baseTag.VMHigh, baseTag.Retired);
DicomAttribute unAttrib = DicomVr.UNvr.CreateDicomAttribute(theTag, theData);
theSet[tag] = unAttrib;
}
internal VolumeSliceSopDataSource(IVolumeReference volumeReference, IVolumeSlicerParams slicerParams, IList<Vector3D> throughPoints)
{
Platform.CheckForNullReference(throughPoints, "throughPoints");
Platform.CheckTrue(throughPoints.Count > 0, "At least one through point must be specified.");
var volume = volumeReference.Volume;
_volumeReference = volumeReference;
_slicerParams = slicerParams;
_resliceMatrix = new Matrix(slicerParams.SlicingPlaneRotation);
_resliceMatrix[3, 0] = throughPoints[0].X;
_resliceMatrix[3, 1] = throughPoints[0].Y;
_resliceMatrix[3, 2] = throughPoints[0].Z;
_throughPoints = new List<Vector3D>(throughPoints).AsReadOnly();
// keep a direct reference to the prototype, so that attribute values are available even if the referenced volume is unloaded via memory management
_prototypeDataSet = volume.DataSet;
_instanceDataSet = new DicomAttributeCollection();
// JY: ideally, each slicing plane is represented by a single multiframe SOP where the individual slices are the frames.
// We need to support multi-valued Slice Location in the base viewer first.
// When that is implemented, the SOPs should be created on the first frame of the slicing (i.e. one of the end slices)
// and the Slice Location Vector will simply store the slice locations relative to that defined in these attributes.
// Also, the rows and columns will have to be computed to be the MAX possible size (all frames must have same size)
// assign Rows and Columns to reflect actual output size
Size frameSize = GetSliceExtent(volume, slicerParams);
_instanceDataSet[DicomTags.Columns].SetInt32(0, frameSize.Width);
_instanceDataSet[DicomTags.Rows].SetInt32(0, frameSize.Height);
// assign Image Orientation (Patient)
Matrix resliceAxesPatientOrientation = _volumeReference.Volume.RotateToPatientOrientation(_resliceMatrix);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(0, resliceAxesPatientOrientation[0, 0]);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(1, resliceAxesPatientOrientation[0, 1]);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(2, resliceAxesPatientOrientation[0, 2]);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(3, resliceAxesPatientOrientation[1, 0]);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(4, resliceAxesPatientOrientation[1, 1]);
_instanceDataSet[DicomTags.ImageOrientationPatient].SetFloat32(5, resliceAxesPatientOrientation[1, 2]);
// assign Image Position (Patient)
Vector3D topLeftOfSlicePatient = GetTopLeftOfSlicePatient(frameSize, throughPoints[0], volume, slicerParams);
_instanceDataSet[DicomTags.ImagePositionPatient].SetFloat32(0, topLeftOfSlicePatient.X);
_instanceDataSet[DicomTags.ImagePositionPatient].SetFloat32(1, topLeftOfSlicePatient.Y);
_instanceDataSet[DicomTags.ImagePositionPatient].SetFloat32(2, topLeftOfSlicePatient.Z);
// assign Number of Frames
_instanceDataSet[DicomTags.NumberOfFrames].SetInt32(0, throughPoints.Count);
// assign a new SOP instance UID
_instanceDataSet[DicomTags.SopInstanceUid].SetString(0, DicomUid.GenerateUid().UID);
}
/// <summary>
/// Create a DicomFile instance from existing MetaInfo and DataSet.
/// </summary>
/// <param name="filename">The name for the file.</param>
/// <param name="metaInfo">A <see cref="DicomAttributeCollection"/> for the MetaInfo (group 0x0002 attributes).</param>
/// <param name="dataSet">A <see cref="DicomAttributeCollection"/> for the DataSet.</param>
public DicomFile(String filename, DicomAttributeCollection metaInfo, DicomAttributeCollection dataSet)
{
MetaInfo = metaInfo;
DataSet = dataSet;
_filename = filename;
ImplementationVersionName = DicomImplementation.Version;
ImplementationClassUid = DicomImplementation.ClassUID.UID;
// If the meta info doesn't already specify the transfer syntax, give it the default transfer syntax of ELE
if (string.IsNullOrEmpty(MetaInfo[DicomTags.TransferSyntaxUid].ToString()))
MetaInfo[DicomTags.TransferSyntaxUid].SetStringValue(TransferSyntax.ExplicitVrLittleEndian.UidString);
MetaInfo[DicomTags.FileMetaInformationVersion].Values = new byte[] { 0x00, 0x01 };
}
public FusionSopDataSource(ISopDataSource realSopDataSource, PETFusionType type, IEnumerable<IDicomAttributeProvider> overlayFrames)
{
_realSopDataSource = realSopDataSource;
_fusionHeaders = new DicomAttributeCollection() {ValidateVrLengths = false, ValidateVrValues = false};
var scEquipment = new ScEquipmentModuleIod(_fusionHeaders);
scEquipment.ConversionType = @"WSD";
scEquipment.SecondaryCaptureDeviceManufacturer = @"ClearCanvas Inc.";
scEquipment.SecondaryCaptureDeviceManufacturersModelName = ProductInformation.GetName(false, false);
scEquipment.SecondaryCaptureDeviceSoftwareVersions = new[] {ProductInformation.GetVersion(true, true, true, true)};
// generate values for the General Image Module
_fusionHeaders[DicomTags.ImageType].SetStringValue(@"DERIVED\SECONDARY");
_fusionHeaders[DicomTags.SourceImageSequence].Values = UpdateSourceImageSequence(realSopDataSource, overlayFrames);
UpdateDerivationType(type);
}
public void SetupMRWithOverlay(DicomAttributeCollection theSet)
{
SetupMR(theSet);
OverlayPlaneModuleIod overlayIod = new OverlayPlaneModuleIod(theSet);
DicomUncompressedPixelData pd = new DicomUncompressedPixelData(theSet);
OverlayPlane overlay = overlayIod[0];
// Embedded overlays are retired in dicom, just doing it for testing purposes
theSet[DicomTags.OverlayBitPosition].SetInt32(0, pd.HighBit + 1);
overlay.OverlayBitsAllocated = 1;
overlay.OverlayColumns = pd.ImageWidth;
overlay.OverlayRows = pd.ImageHeight;
overlay.OverlayOrigin = new Point(0, 0);
overlay.OverlayType = OverlayType.R;
}
private void UpdateStudyTree(DicomAttributeCollection ds)
{
string acession = ds[DicomTags.AccessionNumber].GetString(0, "");
string patientid = ds[DicomTags.PatientId].GetString(0, "");
string name= ds[DicomTags.PatientsName].GetString(0, "");
string modality = ds[DicomTags.ModalitiesInStudy].GetString(0, "");
string description = ds[DicomTags.StudyDescription].GetString(0, "");
string studyinstanceuid = ds[DicomTags.StudyInstanceUid].GetString(0, "");
String text = String.Format("{0}-{1}-{2}-{3}", patientid, name, acession, description);
TreeNode studyNode = new TreeNode();
studyNode.Text = text;
studyNode.Tag = studyinstanceuid;
StudyTree.Nodes.Add(studyNode);
}
public IList<DicomAttributeCollection> Query(DicomAttributeCollection queryCriteria)
{
Platform.CheckForNullReference(queryCriteria, "queryCriteria");
string level = queryCriteria[DicomTags.QueryRetrieveLevel].ToString();
switch (level)
{
case "STUDY":
return StudyQuery(queryCriteria);
case "SERIES":
return SeriesQuery(queryCriteria);
case "IMAGE":
return ImageQuery(queryCriteria);
default:
throw new ArgumentException(String.Format("Invalid query level: {0}", level));
}
}
/// <summary>
/// Generates an (issued) "Query" event in the audit log, according to DICOM Supplement 95.
/// </summary>
/// <param name="remoteAETitle">The application entity on which the query is taking place.</param>
/// <param name="remoteHostName">The hostname of the application entity on which the query is taking place.</param>
/// <param name="eventSource">The source user or application entity which invoked the operation.</param>
/// <param name="eventResult">The result of the operation.</param>
/// <param name="sopClassUid">The SOP Class Uid of the type of DICOM Query being issued</param>
/// <param name="query">The dataset containing the DICOM query being issued</param>
public static void LogQueryIssued(string remoteAETitle, string remoteHostName, EventSource eventSource, EventResult eventResult, string sopClassUid, DicomAttributeCollection query)
{
AuditLogHelper.LogQueryIssued(LocalAETitle, remoteAETitle, remoteHostName, eventSource, EventSource.GetCurrentDicomAE(), eventResult, sopClassUid, query);
}
public InstanceNumber(DicomAttributeCollection criteria)
: base(DicomTags.InstanceNumber, criteria)
{
AddToQueryEnabled = false;
FilterResultsEnabled = true;
}
/// <summary>
/// Generates an (issued) "Query" event in the audit log, according to DICOM Supplement 95.
/// </summary>
/// <param name="localAETitle">The local application entity making the query.</param>
/// <param name="remoteAETitle">The application entity on which the query is taking place.</param>
/// <param name="remoteHostName">The hostname of the application entity on which the query is taking place.</param>
/// <param name="eventSource">The source user or application entity which invoked the operation.</param>
/// <param name="currentAE">The current DICOM AE performing the operation.</param>
/// <param name="eventResult">The result of the operation.</param>
/// <param name="sopClassUid">The SOP Class Uid of the type of DICOM Query being issued</param>
/// <param name="ds">The dataset containing the DICOM query being issued</param>
public static void LogQueryIssued(string localAETitle, string remoteAETitle, string remoteHostName, EventSource eventSource, EventSource currentAE, EventResult eventResult, string sopClassUid, DicomAttributeCollection ds)
{
if (!AuditingEnabled)
{
return;
}
try
{
var auditHelper = new QueryAuditHelper(eventSource, eventResult,
localAETitle, LocalHostname, remoteAETitle ?? localAETitle,
remoteHostName ?? LocalHostname,
sopClassUid, ds);
if (eventSource != currentAE)
{
auditHelper.AddOtherParticipant(currentAE);
}
Log(auditHelper);
}
catch (Exception ex)
{
Platform.Log(LogLevel.Warn, ex, _messageAuditFailed);
}
}
public override StudyItemList Query(QueryParameters queryParams, IApplicationEntity targetServer)
{
Platform.CheckForNullReference(queryParams, "queryParams");
Platform.CheckForNullReference(targetServer, "targetServer");
var selectedServer = targetServer.ToServiceNode();
//.NET strings are unicode, therefore, so is all the query data.
const string utf8 = "ISO_IR 192";
var requestCollection = new DicomAttributeCollection {
SpecificCharacterSet = utf8
};
requestCollection[DicomTags.SpecificCharacterSet].SetStringValue(utf8);
requestCollection[DicomTags.QueryRetrieveLevel].SetStringValue("STUDY");
requestCollection[DicomTags.StudyInstanceUid].SetStringValue("");
requestCollection[DicomTags.PatientId].SetStringValue(queryParams["PatientId"]);
requestCollection[DicomTags.AccessionNumber].SetStringValue(queryParams["AccessionNumber"]);
requestCollection[DicomTags.PatientsName].SetStringValue(queryParams["PatientsName"]);
requestCollection[DicomTags.ReferringPhysiciansName].SetStringValue(queryParams["ReferringPhysiciansName"]);
requestCollection[DicomTags.StudyDate].SetStringValue(queryParams["StudyDate"]);
requestCollection[DicomTags.StudyTime].SetStringValue("");
requestCollection[DicomTags.StudyDescription].SetStringValue(queryParams["StudyDescription"]);
requestCollection[DicomTags.PatientsBirthDate].SetStringValue("");
requestCollection[DicomTags.ModalitiesInStudy].SetStringValue(queryParams["ModalitiesInStudy"]);
requestCollection[DicomTags.NumberOfStudyRelatedInstances].SetStringValue("");
requestCollection[DicomTags.InstanceAvailability].SetEmptyValue(); // must not be included in request
requestCollection[DicomTags.PatientSpeciesDescription].SetStringValue(GetString(queryParams, "PatientSpeciesDescription"));
var codeValue = GetString(queryParams, "PatientSpeciesCodeSequenceCodeValue");
var codeMeaning = GetString(queryParams, "PatientSpeciesCodeSequenceCodeMeaning");
if (codeValue != null || codeMeaning != null)
{
var codeSequenceMacro = new CodeSequenceMacro
{
CodingSchemeDesignator = "",
CodeValue = codeValue,
CodeMeaning = codeMeaning
};
requestCollection[DicomTags.PatientSpeciesCodeSequence].AddSequenceItem(codeSequenceMacro.DicomSequenceItem);
}
requestCollection[DicomTags.PatientBreedDescription].SetStringValue(GetString(queryParams, "PatientBreedDescription"));
codeValue = GetString(queryParams, "PatientBreedCodeSequenceCodeValue");
codeMeaning = GetString(queryParams, "PatientBreedCodeSequenceCodeMeaning");
if (codeValue != null || codeMeaning != null)
{
var codeSequenceMacro = new CodeSequenceMacro
{
CodingSchemeDesignator = "",
CodeValue = codeValue,
CodeMeaning = codeMeaning
};
requestCollection[DicomTags.PatientBreedCodeSequence].AddSequenceItem(codeSequenceMacro.DicomSequenceItem);
}
requestCollection[DicomTags.ResponsiblePerson].SetStringValue(GetString(queryParams, "ResponsiblePerson"));
requestCollection[DicomTags.ResponsiblePersonRole].SetStringValue("");
requestCollection[DicomTags.ResponsibleOrganization].SetStringValue(GetString(queryParams, "ResponsibleOrganization"));
IList <DicomAttributeCollection> results = Query(selectedServer, requestCollection);
StudyItemList studyItemList = new StudyItemList();
foreach (DicomAttributeCollection result in results)
{
StudyItem item = new StudyItem(result[DicomTags.StudyInstanceUid].GetString(0, ""), selectedServer);
//TODO: add DicomField attributes to the StudyItem class (implement typeconverter for PersonName class).
item.PatientsBirthDate = result[DicomTags.PatientsBirthDate].GetString(0, "");
item.AccessionNumber = result[DicomTags.AccessionNumber].GetString(0, "");
item.StudyDescription = result[DicomTags.StudyDescription].GetString(0, "");
item.StudyDate = result[DicomTags.StudyDate].GetString(0, "");
item.StudyTime = result[DicomTags.StudyTime].GetString(0, "");
item.PatientId = result[DicomTags.PatientId].GetString(0, "");
item.PatientsName = new PersonName(result[DicomTags.PatientsName].GetString(0, ""));
item.ReferringPhysiciansName = new PersonName(result[DicomTags.ReferringPhysiciansName].GetString(0, ""));
item.ModalitiesInStudy = DicomStringHelper.GetStringArray(result[DicomTags.ModalitiesInStudy].ToString());
DicomAttribute attribute = result[DicomTags.NumberOfStudyRelatedInstances];
if (!attribute.IsEmpty && !attribute.IsNull)
{
item.NumberOfStudyRelatedInstances = attribute.GetInt32(0, 0);
}
item.SpecificCharacterSet = result.SpecificCharacterSet;
item.InstanceAvailability = result[DicomTags.InstanceAvailability].GetString(0, "");
if (String.IsNullOrEmpty(item.InstanceAvailability))
{
item.InstanceAvailability = "ONLINE";
}
item.PatientSpeciesDescription = result[DicomTags.PatientSpeciesDescription].GetString(0, "");
var patientSpeciesCodeSequence = result[DicomTags.PatientSpeciesCodeSequence];
if (!patientSpeciesCodeSequence.IsNull && patientSpeciesCodeSequence.Count > 0)
{
var codeSequenceMacro = new CodeSequenceMacro(((DicomSequenceItem[])result[DicomTags.PatientSpeciesCodeSequence].Values)[0]);
item.PatientSpeciesCodeSequenceCodingSchemeDesignator = codeSequenceMacro.CodingSchemeDesignator;
item.PatientSpeciesCodeSequenceCodeValue = codeSequenceMacro.CodeValue;
item.PatientSpeciesCodeSequenceCodeMeaning = codeSequenceMacro.CodeMeaning;
}
item.PatientBreedDescription = result[DicomTags.PatientBreedDescription].GetString(0, "");
var patientBreedCodeSequence = result[DicomTags.PatientBreedCodeSequence];
if (!patientBreedCodeSequence.IsNull && patientBreedCodeSequence.Count > 0)
{
var codeSequenceMacro = new CodeSequenceMacro(((DicomSequenceItem[])result[DicomTags.PatientBreedCodeSequence].Values)[0]);
item.PatientBreedCodeSequenceCodingSchemeDesignator = codeSequenceMacro.CodingSchemeDesignator;
item.PatientBreedCodeSequenceCodeValue = codeSequenceMacro.CodeValue;
item.PatientBreedCodeSequenceCodeMeaning = codeSequenceMacro.CodeMeaning;
}
item.ResponsiblePerson = new PersonName(result[DicomTags.ResponsiblePerson].GetString(0, ""));
item.ResponsiblePersonRole = result[DicomTags.ResponsiblePersonRole].GetString(0, "");
item.ResponsibleOrganization = result[DicomTags.ResponsibleOrganization].GetString(0, "");
studyItemList.Add(item);
}
AuditHelper.LogQueryIssued(selectedServer.AETitle, selectedServer.ScpParameters.HostName, EventSource.CurrentUser,
EventResult.Success, SopClass.StudyRootQueryRetrieveInformationModelFindUid,
requestCollection);
return(studyItemList);
}
public void SetupDataSet(DicomAttributeCollection theSet, string characterSet)
{
DateTime studyTime = DateTime.Now;
theSet[DicomTags.SpecificCharacterSet].SetStringValue(characterSet);
theSet[DicomTags.ImageType].SetStringValue("ORIGINAL\\PRIMARY\\OTHER\\");
theSet[DicomTags.InstanceCreationDate].SetStringValue(DateParser.ToDicomString(DateTime.Now));
theSet[DicomTags.InstanceCreationTime].SetStringValue(TimeParser.ToDicomString(DateTime.Now));
theSet[DicomTags.SopClassUid].SetStringValue(SopClass.SecondaryCaptureImageStorageUid);
theSet[DicomTags.SopInstanceUid].SetStringValue(DicomUid.GenerateUid().UID);
theSet[DicomTags.StudyDate].SetStringValue(DateParser.ToDicomString(studyTime));
theSet[DicomTags.StudyTime].SetStringValue(TimeParser.ToDicomString(studyTime));
theSet[DicomTags.SeriesDate].SetStringValue(DateParser.ToDicomString(studyTime));
theSet[DicomTags.SeriesTime].SetStringValue(TimeParser.ToDicomString(studyTime));
theSet[DicomTags.AccessionNumber].SetStringValue("A1234");
theSet[DicomTags.Modality].SetStringValue("MR");
theSet[DicomTags.Manufacturer].SetStringValue("ClearCanvas");
theSet[DicomTags.ManufacturersModelName].SetNullValue();
theSet[DicomTags.InstitutionName].SetStringValue("Toronto General Hospital");
theSet[DicomTags.ReferringPhysiciansName].SetStringValue("Last^First");
theSet[DicomTags.StudyDescription].SetStringValue("TEST");
theSet[DicomTags.SeriesDescription].SetStringValue("TEST");
theSet[DicomTags.PatientsName].SetStringValue("Patient^Test");
theSet[DicomTags.PatientId].SetStringValue("ID123-45-9999");
theSet[DicomTags.PatientsBirthDate].SetStringValue("19600102");
theSet[DicomTags.PatientsSize].SetStringValue("10.000244140625");
theSet[DicomTags.SequenceVariant].SetStringValue("OTHER");
theSet[DicomTags.DeviceSerialNumber].SetStringValue("1234");
theSet[DicomTags.SoftwareVersions].SetStringValue("V1.0");
theSet[DicomTags.PatientPosition].SetStringValue("HFS");
theSet[DicomTags.StudyInstanceUid].SetStringValue(DicomUid.GenerateUid().UID);
theSet[DicomTags.SeriesInstanceUid].SetStringValue(DicomUid.GenerateUid().UID);
theSet[DicomTags.StudyId].SetStringValue("1933");
theSet[DicomTags.SeriesNumber].SetStringValue("1");
theSet[DicomTags.InstanceNumber].SetStringValue("1");
theSet[DicomTags.ImageComments].SetStringValue("Test SC Image");
theSet[DicomTags.SamplesPerPixel].SetStringValue("1");
theSet[DicomTags.PhotometricInterpretation].SetStringValue("MONOCHROME2");
theSet[DicomTags.Rows].SetStringValue("256");
theSet[DicomTags.Columns].SetStringValue("256");
theSet[DicomTags.BitsAllocated].SetStringValue("16");
theSet[DicomTags.BitsStored].SetStringValue("12");
theSet[DicomTags.HighBit].SetStringValue("11");
theSet[DicomTags.PixelRepresentation].SetStringValue("0");
uint length = 256 * 256 * 2;
DicomAttributeOW pixels = new DicomAttributeOW(DicomTags.PixelData);
byte[] pixelArray = new byte[length];
for (uint i = 0; i < length; i += 2)
{
pixelArray[i] = (byte)(i % 255);
}
pixels.Values = pixelArray;
theSet[DicomTags.PixelData] = pixels;
DicomSequenceItem item = new DicomSequenceItem();
theSet[DicomTags.RequestAttributesSequence].AddSequenceItem(item);
item[DicomTags.RequestedProcedureId].SetStringValue("MRR1234");
item[DicomTags.ScheduledProcedureStepId].SetStringValue("MRS1234");
item = new DicomSequenceItem();
theSet[DicomTags.RequestAttributesSequence].AddSequenceItem(item);
item[DicomTags.RequestedProcedureId].SetStringValue("MR2R1234");
item[DicomTags.ScheduledProcedureStepId].SetStringValue("MR2S1234");
DicomSequenceItem studyItem = new DicomSequenceItem();
item[DicomTags.ReferencedStudySequence].AddSequenceItem(studyItem);
studyItem[DicomTags.ReferencedSopClassUid].SetStringValue(SopClass.SecondaryCaptureImageStorageUid);
studyItem[DicomTags.ReferencedSopInstanceUid].SetStringValue("1.2.3.4.5.6.7.8.9");
}
public StudyRootQueryResultEntry(DicomAttributeCollection attributeCollection)
{
this._attributeCollection = attributeCollection;
}
public SopClassUid(DicomAttributeCollection criteria)
: base(DicomTags.SopClassUid, criteria)
{
AddToQueryEnabled = false;
FilterResultsEnabled = true;
}
public CodingSchemeDesignator(DicomAttributeCollection criteria)
: base(new DicomTagPath(DicomTags.PatientSpeciesCodeSequence, DicomTags.CodingSchemeDesignator), criteria)
{
}
public CodeMeaning(DicomAttributeCollection criteria)
: base(new DicomTagPath(DicomTags.PatientSpeciesCodeSequence, DicomTags.CodeMeaning), criteria)
{
}
public void OnReceiveDimseCommand(DicomServer server, ServerAssociationParameters association, byte presentationId,
DicomAttributeCollection command)
{
}
public NotificationSeries(DicomAttributeCollection c)
: base(c)
{
}
public PatientId(DicomAttributeCollection criteria)
: base(new DicomTagPath(DicomTags.PatientId), criteria)
{
}
public PatientsBirthTime(DicomAttributeCollection criteria)
: base(new DicomTagPath(DicomTags.PatientsBirthTime), criteria)
{
}
public PatientsSex(DicomAttributeCollection criteria)
: base(DicomTags.PatientsSex, criteria)
{
}
/// <summary>
/// Called when received response message.
/// </summary>
/// <param name="client">The client.</param>
/// <param name="association">The association.</param>
/// <param name="presentationID">The presentation ID.</param>
/// <param name="message">The message.</param>
public override void OnReceiveResponseMessage(DicomClient client, ClientAssociationParameters association, byte presentationID, DicomMessage message)
{
try
{
base.ResultStatus = message.Status.Status;
if (message.Status.Status == DicomState.Success)
{
if (message.CommandField == DicomCommandField.NCreateResponse && message.AffectedSopClassUid == SopClass.BasicFilmSessionSopClassUid)
{
_filmSessionUid = message.AffectedSopInstanceUid;
}
else if (message.CommandField == DicomCommandField.NCreateResponse && message.AffectedSopClassUid == SopClass.BasicFilmBoxSopClassUid)
{
_filmBoxUids.Add(message.AffectedSopInstanceUid);
_filmBoxResponseMessages.Add(message.AffectedSopInstanceUid, message.DataSet);
}
Platform.Log(LogLevel.Info, "Success status received in Printer Status Scu!");
_results = message.DataSet;
switch (_nextRequestType)
{
case RequestType.FilmBox:
SendCreateFilmBoxRequest(client, association, message);
break;
case RequestType.ImageBox:
SendSetImageBoxRequest(client, association);
break;
case RequestType.PrintAction:
SendActionPrintRequest(client, association);
break;
case RequestType.DeleteFilmBox:
SendDeleteFilmBoxRequest(client, association, message);
break;
case RequestType.DeleteFilmSession:
SendDeleteFilmSessionRequest(client, association);
break;
case RequestType.Close:
base.ReleaseConnection(client);
break;
case RequestType.None:
default:
// TODO: throw error....
break;
}
}
else
{
// TODO: Handle this... check for warnings - they are OK? throw exception on errors... ?
}
}
catch (Exception ex)
{
Platform.Log(LogLevel.Error, ex.ToString());
base.ReleaseConnection(client);
throw;
}
}
protected DicomSoftcopyPresentationStateBase(SopClass psSopClass, DicomAttributeCollection dataSource) : base(psSopClass, dataSource)
{
}
public NotificationPatient(DicomAttributeCollection c)
: base(c)
{
}
protected StringDicomPropertyFilter(DicomTagPath path, DicomAttributeCollection criteria)
: base(path, criteria)
{
_rule = new MultiValuedPropertyRule <TDatabaseObject>(this);
}
public PatientSpeciesDescription(DicomAttributeCollection criteria)
: base(new DicomTagPath(DicomTags.PatientSpeciesDescription), criteria)
{
}
public NotificationImage(DicomAttributeCollection c)
: base(c)
{
}
public void InstanceMINTXmlConstructorTest()
{
string xml =
@"<Instance>
<Attributes>
<Attr tag='00100010' vr='PN' val='DOE^JON' />
<Attr tag='00080018' vr='UI' val='123.333' />
<Attr tag='00080032' vr='TM' val='134437.3' />
<Attr tag='00080033' vr='TM' val='134437.4' />
<Attr tag='00081140' vr='SQ' >
<Item id='0'>
<Attr tag='00081150' vr='UI' val='1.2.3.4' />
<Attr tag='00081155' vr='UI' val='4.3.2.1' />
</Item>
<Item id='0'>
<Attr tag='00081150' vr='UI' val='5.6.7.8' />
<Attr tag='00081155' vr='UI' val='9.8.7.6' />
</Item>
</Attr>
<Attr tag='7fe00010' vr='OW' bid='13' />
</Attributes>
</Instance>"
;
XmlDocument doc = new XmlDocument();
doc.LoadXml(xml);
var loaderArgs = new StudyLoaderArgs("123.111", null);
var studyAttributes = new DicomAttributeCollection();
var seriesAttributes = new DicomAttributeCollection();
// Make sure one attribute is in conflict with an attribute parsed from the
// instance XML (the instance XML value should not take precedence here). This would
// typically never happen.
studyAttributes[DicomTags.StudyInstanceUid].SetStringValue("123.111");
studyAttributes[DicomTags.PatientsName].SetStringValue("ABC^TUV");
seriesAttributes[DicomTags.SeriesInstanceUid].SetStringValue("123.222");
var instance = new InstanceMINTXml(loaderArgs, "http://some-uri/DICOM/metadata",
doc.DocumentElement, studyAttributes, seriesAttributes, null);
Assert.AreEqual("123.111", instance[DicomTags.StudyInstanceUid].GetString(0, ""));
Assert.AreEqual("123.222", instance[DicomTags.SeriesInstanceUid].GetString(0, ""));
Assert.AreEqual("ABC^TUV", instance[DicomTags.PatientsName].GetString(0, ""));
Assert.AreEqual("123.333", instance[DicomTags.SopInstanceUid].GetString(0, ""));
Assert.AreEqual("134437.3", instance[DicomTags.AcquisitionTime].GetString(0, ""));
Assert.AreEqual("134437.4", instance[DicomTags.ContentTime].GetString(0, ""));
Assert.IsInstanceOfType(typeof(DicomAttributeSQ), instance[DicomTags.ReferencedImageSequence]);
var sq = instance[DicomTags.ReferencedImageSequence] as DicomAttributeSQ;
Assert.IsNotNull(sq);
Assert.AreEqual(2, sq.Count);
var item = sq[0];
Assert.AreEqual("1.2.3.4", item[DicomTags.ReferencedSopClassUid].GetString(0, ""));
Assert.AreEqual("4.3.2.1", item[DicomTags.ReferencedSopInstanceUid].GetString(0, ""));
item = sq[1];
Assert.AreEqual("5.6.7.8", item[DicomTags.ReferencedSopClassUid].GetString(0, ""));
Assert.AreEqual("9.8.7.6", item[DicomTags.ReferencedSopInstanceUid].GetString(0, ""));
Assert.AreEqual("http://some-uri/DICOM/binaryitems/13",
instance.PixelDataUri.AbsoluteUri);
}
/// <summary>
/// Internal constructor used when making a copy of a <see cref="DicomAttributeCollection"/>.
/// </summary>
/// <param name="source"></param>
/// <param name="copyBinary"></param>
/// <param name="copyPrivate"></param>
/// <param name="copyUnknown"></param>
internal DicomSequenceItem(DicomAttributeCollection source, bool copyBinary, bool copyPrivate, bool copyUnknown)
: base(source, copyBinary, copyPrivate, copyUnknown)
{
}
public SystemCacheProxy()
{
_dataHead = new DicomAttributeCollection();
}
public void PrivateAttributeTest()
{
DicomFile file = new DicomFile("LittleEndianPrivateReadFileTest.dcm");
DicomAttributeCollection dataSet = file.DataSet;
SetupMR(dataSet);
DicomTag privateCreatorTag = new DicomTag(0x00090010, "PrivateCreator", "PrivateCreator", DicomVr.LOvr, false, 1, 1,
false);
dataSet[privateCreatorTag].SetStringValue("ClearCanvasGroup9");
DicomTag privateTagFL = new DicomTag(0x00091020, "PrivateFL", "PrivateFL", DicomVr.FLvr, true, 1, 10, false);
DicomTag privateTagLO = new DicomTag(0x00091021, "PrivateLO", "PrivateLO", DicomVr.LOvr, true, 1, 10, false);
DicomTag privateTagAE = new DicomTag(0x00091022, "PrivateAE", "PrivateAE", DicomVr.AEvr, true, 1, 10, false);
DicomTag privateTagAS = new DicomTag(0x00091023, "PrivateAS", "PrivateAS", DicomVr.ASvr, true, 1, 10, false);
DicomTag privateTagAT = new DicomTag(0x00091024, "PrivateAT", "PrivateAT", DicomVr.ATvr, true, 1, 10, false);
DicomTag privateTagCS = new DicomTag(0x00091025, "PrivateCS", "PrivateCS", DicomVr.CSvr, true, 1, 10, false);
DicomTag privateTagDA = new DicomTag(0x00091026, "PrivateDA", "PrivateDA", DicomVr.DAvr, true, 1, 10, false);
DicomTag privateTagDS = new DicomTag(0x00091027, "PrivateDS", "PrivateDS", DicomVr.DSvr, true, 1, 10, false);
DicomTag privateTagDT = new DicomTag(0x00091028, "PrivateDT", "PrivateDT", DicomVr.DTvr, true, 1, 10, false);
DicomTag privateTagFD = new DicomTag(0x00091029, "PrivateFD", "PrivateFD", DicomVr.FDvr, true, 1, 10, false);
DicomTag privateTagIS = new DicomTag(0x00091030, "PrivateIS", "PrivateIS", DicomVr.ISvr, true, 1, 10, false);
DicomTag privateTagLT = new DicomTag(0x00091031, "PrivateLT", "PrivateLT", DicomVr.LTvr, true, 1, 1, false);
DicomTag privateTagOB = new DicomTag(0x00091032, "PrivateOB", "PrivateOB", DicomVr.OBvr, true, 1, 1, false);
DicomTag privateTagOF = new DicomTag(0x00091033, "PrivateOF", "PrivateOF", DicomVr.OFvr, true, 1, 1, false);
DicomTag privateTagOW = new DicomTag(0x00091034, "PrivateOW", "PrivateOW", DicomVr.OWvr, true, 1, 1, false);
DicomTag privateTagPN = new DicomTag(0x00091035, "PrivatePN", "PrivatePN", DicomVr.PNvr, true, 1, 10, false);
DicomTag privateTagSH = new DicomTag(0x00091036, "PrivateSH", "PrivateSH", DicomVr.SHvr, true, 1, 10, false);
DicomTag privateTagSL = new DicomTag(0x00091037, "PrivateSL", "PrivateSL", DicomVr.SLvr, true, 1, 10, false);
DicomTag privateTagSQ = new DicomTag(0x00091038, "PrivateSQ", "PrivateSQ", DicomVr.SQvr, true, 1, 10, false);
DicomTag privateTagSS = new DicomTag(0x00091039, "PrivateSS", "PrivateSS", DicomVr.SSvr, true, 1, 10, false);
DicomTag privateTagST = new DicomTag(0x00091040, "PrivateST", "PrivateST", DicomVr.STvr, true, 1, 10, false);
DicomTag privateTagTM = new DicomTag(0x00091041, "PrivateTM", "PrivateTM", DicomVr.TMvr, true, 1, 10, false);
DicomTag privateTagUI = new DicomTag(0x00091042, "PrivateUI", "PrivateUI", DicomVr.UIvr, true, 1, 10, false);
DicomTag privateTagUL = new DicomTag(0x00091043, "PrivateUI", "PrivateUI", DicomVr.ULvr, true, 1, 10, false);
DicomTag privateTagUS = new DicomTag(0x00091044, "PrivateUS", "PrivateUS", DicomVr.USvr, true, 1, 10, false);
DicomTag privateTagUT = new DicomTag(0x00091045, "PrivateUT", "PrivateUT", DicomVr.UTvr, true, 1, 1, false);
List <DicomTag> tagList = new List <DicomTag>();
dataSet[privateTagFL].AppendFloat32(1.1f);
dataSet[privateTagFL].AppendFloat32(1.1123132f);
tagList.Add(privateTagFL);
dataSet[privateTagLO].AppendString("Test");
dataSet[privateTagLO].AppendString("Test Me 2");
tagList.Add(privateTagLO);
dataSet[privateTagAE].AppendString("TESTAE1");
dataSet[privateTagAE].AppendString("TESTAE2");
tagList.Add(privateTagAE);
dataSet[privateTagAS].AppendString("003Y");
dataSet[privateTagAS].AppendString("003D");
tagList.Add(privateTagAS);
dataSet[privateTagAT].AppendUInt32(DicomTags.ZoomFactor);
dataSet[privateTagAT].AppendUInt32(DicomTags.PhotometricInterpretation);
tagList.Add(privateTagAT);
dataSet[privateTagCS].AppendString("CODE1");
dataSet[privateTagCS].AppendString("CODE2");
tagList.Add(privateTagCS);
dataSet[privateTagDA].AppendDateTime(DateTime.Now);
dataSet[privateTagDA].AppendDateTime(DateTime.Now);
tagList.Add(privateTagDA);
dataSet[privateTagDS].AppendFloat64(1.12351234124124f);
dataSet[privateTagDS].AppendFloat64(-12312312312.1231f);
tagList.Add(privateTagDS);
dataSet[privateTagDT].AppendDateTime(DateTime.Now);
dataSet[privateTagDT].AppendDateTime(DateTime.Now);
tagList.Add(privateTagDT);
dataSet[privateTagFD].AppendFloat64(1.112312d);
dataSet[privateTagFD].AppendFloat64(-11123.13211d);
tagList.Add(privateTagFD);
dataSet[privateTagIS].AppendString("123456789");
dataSet[privateTagIS].AppendString("123456789876");
tagList.Add(privateTagIS);
dataSet[privateTagLT].SetStringValue("Now is the time for all good men to come to the aide of their country.");
tagList.Add(privateTagLT);
dataSet[privateTagPN].AppendString("Last^First^Middle^Post");
dataSet[privateTagPN].AppendString("W^Steven^R^Test");
tagList.Add(privateTagPN);
dataSet[privateTagST].SetStringValue("Now is the time for all good men to come to the aide of their country.");
tagList.Add(privateTagST);
dataSet[privateTagSH].AppendString("Short text 1");
dataSet[privateTagSH].AppendString("Short text 2");
dataSet[privateTagSH].AppendString("Short text 3");
dataSet[privateTagSH].AppendString("Short text 4");
tagList.Add(privateTagSH);
dataSet[privateTagSL].AppendInt32(1024);
dataSet[privateTagSL].AppendInt32(2048);
dataSet[privateTagSL].AppendInt32(4096);
dataSet[privateTagSL].AppendInt32(8192);
dataSet[privateTagSL].AppendInt32(-1024);
dataSet[privateTagSL].AppendInt32(-2048);
dataSet[privateTagSL].AppendInt32(-4096);
dataSet[privateTagSL].AppendInt32(-8192);
tagList.Add(privateTagSL);
dataSet[privateTagSS].AppendInt16(-1024);
dataSet[privateTagSS].AppendInt16(512);
dataSet[privateTagSS].AppendInt16(-256);
dataSet[privateTagSS].AppendInt16(128);
tagList.Add(privateTagSS);
dataSet[privateTagTM].AppendDateTime(DateTime.Now);
dataSet[privateTagTM].AppendDateTime(DateTime.Now);
tagList.Add(privateTagTM);
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
tagList.Add(privateTagUI);
dataSet[privateTagUL].AppendUInt32(128);
dataSet[privateTagUL].AppendUInt32(1024);
dataSet[privateTagUL].AppendUInt32(16384);
dataSet[privateTagUL].AppendUInt32(123123123);
tagList.Add(privateTagUL);
dataSet[privateTagUS].AppendUInt16(128);
dataSet[privateTagUS].AppendUInt16(64);
dataSet[privateTagUS].AppendUInt16(256);
tagList.Add(privateTagUS);
dataSet[privateTagUT].SetStringValue("A man, a plan, a canal, panama.");
tagList.Add(privateTagUT);
dataSet[privateTagOB].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06 };
tagList.Add(privateTagOB);
dataSet[privateTagOW].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06 };
tagList.Add(privateTagOW);
dataSet[privateTagOF].Values = new[] { 1.1111f, 2.222f, 3.3333f, 44444.444f, 5555.555f, 66666.66666f, 123123.123123f };
tagList.Add(privateTagOF);
DicomSequenceItem item = new DicomSequenceItem();
item[DicomTags.PhotometricInterpretation].AppendString("MONOCHROME1");
item[DicomTags.Rows].AppendUInt16(256);
item[DicomTags.Columns].AppendUInt16(256);
item[DicomTags.BitsAllocated].AppendUInt16(8);
item[DicomTags.BitsStored].AppendUInt16(8);
item[DicomTags.HighBit].AppendUInt16(7);
dataSet[privateTagSQ].AddSequenceItem(item);
// SQ Attribute UN parsing does not work right now, don't add to the list.
//tagList.Add(privateTagSQ);
SetupMetaInfo(file);
dataSet[DicomTags.StudyDescription].SetNullValue();
// Little Endian Tests
file.TransferSyntax = TransferSyntax.ImplicitVrLittleEndian;
DicomReadOptions readOptions = DicomReadOptions.Default;
// Use ExplicitLengthSequence to force SQ attributes to UN VR when they're ready back in
bool result = file.Save(DicomWriteOptions.ExplicitLengthSequence);
Assert.AreEqual(result, true);
DicomFile newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
Assert.IsTrue(newFile.DataSet[DicomTags.StudyDescription].IsNull);
Assert.AreNotEqual(file.DataSet.Equals(newFile.DataSet), true);
foreach (DicomTag tag in tagList)
{
DicomAttributeUN unAttrib = newFile.DataSet[tag] as DicomAttributeUN;
Assert.IsNotNull(unAttrib, String.Format("UN VR Attribute is not null for tag {0}", tag));
ByteBuffer bb = unAttrib.GetByteBuffer(TransferSyntax.ImplicitVrLittleEndian,
newFile.DataSet[DicomTags.SpecificCharacterSet].ToString());
Assert.IsNotNull(bb, String.Format("ByteBuffer not null for tag: {0}", tag));
DicomAttribute validAttrib = tag.VR.CreateDicomAttribute(tag, bb);
Assert.IsNotNull(validAttrib);
Assert.IsTrue(validAttrib.Equals(file.DataSet[tag]), String.Format("Attributes equal for tag {0}", tag));
}
}
public void SQUNTests()
{
uint fakeTag = 0x00880199; // IconImageSequence is 0x00880200
DicomTag fakeSQTag = new DicomTag(fakeTag, "Fake Icon", "FakeIcon", DicomVr.SQvr, false, 1, 1, false);
if (DicomTagDictionary.TagDictionary.ContainsKey(fakeTag))
{
DicomTagDictionary.TagDictionary.Remove(fakeTag);
}
DicomTagDictionary.TagDictionary.Add(fakeTag, fakeSQTag);
DicomFile file = new DicomFile("SQUNTest.dcm");
DicomAttributeCollection dataSet = file.DataSet;
SetupMetaInfo(file);
SetupMR(dataSet);
DicomSequenceItem item = new DicomSequenceItem();
item[DicomTags.PhotometricInterpretation].AppendString("MONOCHROME1");
item[DicomTags.Rows].AppendUInt16(4);
item[DicomTags.Columns].AppendUInt16(4);
item[DicomTags.BitsAllocated].AppendUInt16(8);
item[DicomTags.BitsStored].AppendUInt16(8);
item[DicomTags.HighBit].AppendUInt16(7);
item[DicomTags.PixelData].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06, 0x07, 0x08, 0x09, 0x0A, 0x0B, 0x0C, 0x0D, 0x0E, 0x0F, 0x10 };
dataSet[fakeSQTag].AddSequenceItem(item);
// Save the file
DicomFile originalFile = new DicomFile("", file.MetaInfo.Copy(), file.DataSet.Copy());
DicomTagDictionary.TagDictionary.Remove(fakeTag);
List <DicomAttributeComparisonResult> results = new List <DicomAttributeComparisonResult>();
bool compare;
DicomReadOptions readOptions = DicomReadOptions.Default;
// Little Endian Tests
file.TransferSyntax = TransferSyntax.ImplicitVrLittleEndian;
// Implicit Little Endian, No tag in the Dictionary, Explicit Length SQ
Assert.IsTrue(file.Save(DicomWriteOptions.ExplicitLengthSequence), "UN File Save");
DicomFile newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
Assert.AreNotEqual(originalFile.DataSet.Equals(newFile.DataSet), true);
DicomFile saveUNfile = newFile;
// Implicit Little Endian, No tag in the Dictionary, Implicit Length SQ
// Parser knows its a SQ from implicit length SQ
Assert.IsTrue(file.Save(DicomWriteOptions.ExplicitLengthSequenceItem), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = originalFile.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
// Implicit Little Endian, No tag in the Dictionary, Implicit Length SQ
// Parser knows its a SQ from implicit length SQ
Assert.IsTrue(file.Save(DicomWriteOptions.None), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = originalFile.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
file = saveUNfile;
file.TransferSyntax = TransferSyntax.ExplicitVrLittleEndian;
// Explicit Little Endian, No tag in the dictionary, UN SQ
// Parser keeps tag as UN
Assert.IsTrue(file.Save(DicomWriteOptions.None), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = file.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
Assert.AreNotEqual(originalFile.DataSet.Equals(newFile.DataSet), true);
file.TransferSyntax = TransferSyntax.ExplicitVrBigEndian;
// Explicit Big Endian, No tag in the dictionary, UN SQ
// Parser keeps tag as UN
Assert.IsTrue(file.Save(DicomWriteOptions.None), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = file.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
Assert.AreNotEqual(originalFile.DataSet.Equals(newFile.DataSet), true);
// Now add the tag into thedictionary
DicomTagDictionary.TagDictionary.Add(fakeTag, fakeSQTag);
file.TransferSyntax = TransferSyntax.ExplicitVrLittleEndian;
// Note, if we add parsing of SQ UN tags, the result of this test would change
// Explicit Little Endian, Tag in the dictionary, UN SQ
// Parser keeps tag as UN
Assert.IsTrue(file.Save(DicomWriteOptions.None), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = file.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
Assert.AreNotEqual(originalFile.DataSet.Equals(newFile.DataSet), true);
file.TransferSyntax = TransferSyntax.ExplicitVrBigEndian;
// Note, if we add parsing of SQ UN tags, the result of this test would change
// Explicit Big Endian, Tag in the dictionary, UN SQ
// Parser keeps tag as UN
Assert.IsTrue(file.Save(DicomWriteOptions.None), "UN File Save");
newFile = new DicomFile(file.Filename);
newFile.Load(readOptions);
results = new List <DicomAttributeComparisonResult>();
compare = file.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
Assert.AreNotEqual(originalFile.DataSet.Equals(newFile.DataSet), true);
}
private void SetupPrivateGroups(List <DicomTag> tagList, DicomAttributeCollection dataSet)
{
DicomTag privateCreatorTag = new DicomTag(0x00090010, "PrivateCreator", "PrivateCreator", DicomVr.LOvr, false, 1, 1,
false);
dataSet[privateCreatorTag].SetStringValue("ClearCanvasGroup9");
DicomTag privateTagFL = new DicomTag(0x00091020, "PrivateFL", "PrivateFL", DicomVr.FLvr, true, 1, 10, false);
DicomTag privateTagLO = new DicomTag(0x00091021, "PrivateLO", "PrivateLO", DicomVr.LOvr, true, 1, 10, false);
DicomTag privateTagAE = new DicomTag(0x00091022, "PrivateAE", "PrivateAE", DicomVr.AEvr, true, 1, 10, false);
DicomTag privateTagAS = new DicomTag(0x00091023, "PrivateAS", "PrivateAS", DicomVr.ASvr, true, 1, 10, false);
DicomTag privateTagAT = new DicomTag(0x00091024, "PrivateAT", "PrivateAT", DicomVr.ATvr, true, 1, 10, false);
DicomTag privateTagCS = new DicomTag(0x00091025, "PrivateCS", "PrivateCS", DicomVr.CSvr, true, 1, 10, false);
DicomTag privateTagDA = new DicomTag(0x00091026, "PrivateDA", "PrivateDA", DicomVr.DAvr, true, 1, 10, false);
DicomTag privateTagDS = new DicomTag(0x00091027, "PrivateDS", "PrivateDS", DicomVr.DSvr, true, 1, 10, false);
DicomTag privateTagDT = new DicomTag(0x00091028, "PrivateDT", "PrivateDT", DicomVr.DTvr, true, 1, 10, false);
DicomTag privateTagFD = new DicomTag(0x00091029, "PrivateFD", "PrivateFD", DicomVr.FDvr, true, 1, 10, false);
DicomTag privateTagIS = new DicomTag(0x00091030, "PrivateIS", "PrivateIS", DicomVr.ISvr, true, 1, 10, false);
DicomTag privateTagLT = new DicomTag(0x00091031, "PrivateLT", "PrivateLT", DicomVr.LTvr, true, 1, 1, false);
DicomTag privateTagOB = new DicomTag(0x00091032, "PrivateOB", "PrivateOB", DicomVr.OBvr, true, 1, 1, false);
DicomTag privateTagOF = new DicomTag(0x00091033, "PrivateOF", "PrivateOF", DicomVr.OFvr, true, 1, 1, false);
DicomTag privateTagOW = new DicomTag(0x00091034, "PrivateOW", "PrivateOW", DicomVr.OWvr, true, 1, 1, false);
DicomTag privateTagPN = new DicomTag(0x00091035, "PrivatePN", "PrivatePN", DicomVr.PNvr, true, 1, 10, false);
DicomTag privateTagSH = new DicomTag(0x00091036, "PrivateSH", "PrivateSH", DicomVr.SHvr, true, 1, 10, false);
DicomTag privateTagSL = new DicomTag(0x00091037, "PrivateSL", "PrivateSL", DicomVr.SLvr, true, 1, 10, false);
DicomTag privateTagSQ = new DicomTag(0x00091038, "PrivateSQ", "PrivateSQ", DicomVr.SQvr, true, 1, 10, false);
DicomTag privateTagSS = new DicomTag(0x00091039, "PrivateSS", "PrivateSS", DicomVr.SSvr, true, 1, 10, false);
DicomTag privateTagST = new DicomTag(0x00091040, "PrivateST", "PrivateST", DicomVr.STvr, true, 1, 10, false);
DicomTag privateTagTM = new DicomTag(0x00091041, "PrivateTM", "PrivateTM", DicomVr.TMvr, true, 1, 10, false);
DicomTag privateTagUI = new DicomTag(0x00091042, "PrivateUI", "PrivateUI", DicomVr.UIvr, true, 1, 10, false);
DicomTag privateTagUL = new DicomTag(0x00091043, "PrivateUI", "PrivateUI", DicomVr.ULvr, true, 1, 10, false);
DicomTag privateTagUS = new DicomTag(0x00091044, "PrivateUS", "PrivateUS", DicomVr.USvr, true, 1, 10, false);
DicomTag privateTagUT = new DicomTag(0x00091045, "PrivateUT", "PrivateUT", DicomVr.UTvr, true, 1, 1, false);
dataSet[privateTagFL].AppendFloat32(1.1f);
dataSet[privateTagFL].AppendFloat32(1.1123132f);
tagList.Add(privateTagFL);
dataSet[privateTagLO].AppendString("Test");
dataSet[privateTagLO].AppendString("Test Me 2");
tagList.Add(privateTagLO);
dataSet[privateTagAE].AppendString("TESTAE1");
dataSet[privateTagAE].AppendString("TESTAE2");
tagList.Add(privateTagAE);
dataSet[privateTagAS].AppendString("003Y");
dataSet[privateTagAS].AppendString("003D");
tagList.Add(privateTagAS);
dataSet[privateTagAT].AppendUInt32(DicomTags.ZoomFactor);
dataSet[privateTagAT].AppendUInt32(DicomTags.PhotometricInterpretation);
tagList.Add(privateTagAT);
dataSet[privateTagCS].AppendString("CODE1");
dataSet[privateTagCS].AppendString("CODE2");
tagList.Add(privateTagCS);
dataSet[privateTagDA].AppendDateTime(DateTime.Now);
dataSet[privateTagDA].AppendDateTime(DateTime.Now);
tagList.Add(privateTagDA);
dataSet[privateTagDS].AppendFloat64(1.12351234124124f);
dataSet[privateTagDS].AppendFloat64(-12312312312.1231f);
tagList.Add(privateTagDS);
dataSet[privateTagDT].AppendDateTime(DateTime.Now);
dataSet[privateTagDT].AppendDateTime(DateTime.Now);
tagList.Add(privateTagDT);
dataSet[privateTagFD].AppendFloat64(1.112312d);
dataSet[privateTagFD].AppendFloat64(-11123.13211d);
tagList.Add(privateTagFD);
dataSet[privateTagIS].AppendString("123456789");
dataSet[privateTagIS].AppendString("123456789876");
tagList.Add(privateTagIS);
dataSet[privateTagLT].SetStringValue("Now is the time for all good men to come to the aide of their country.");
tagList.Add(privateTagLT);
dataSet[privateTagPN].AppendString("Last^First^Middle^Post");
dataSet[privateTagPN].AppendString("W^Steven^R^Test");
tagList.Add(privateTagPN);
dataSet[privateTagST].SetStringValue("Now is the time for all good men to come to the aide of their country.");
tagList.Add(privateTagST);
dataSet[privateTagSH].AppendString("Short text 1");
dataSet[privateTagSH].AppendString("Short text 2");
dataSet[privateTagSH].AppendString("Short text 3");
dataSet[privateTagSH].AppendString("Short text 4");
tagList.Add(privateTagSH);
dataSet[privateTagSL].AppendInt32(1024);
dataSet[privateTagSL].AppendInt32(2048);
dataSet[privateTagSL].AppendInt32(4096);
dataSet[privateTagSL].AppendInt32(8192);
dataSet[privateTagSL].AppendInt32(-1024);
dataSet[privateTagSL].AppendInt32(-2048);
dataSet[privateTagSL].AppendInt32(-4096);
dataSet[privateTagSL].AppendInt32(-8192);
tagList.Add(privateTagSL);
dataSet[privateTagSS].AppendInt16(-1024);
dataSet[privateTagSS].AppendInt16(512);
dataSet[privateTagSS].AppendInt16(-256);
dataSet[privateTagSS].AppendInt16(128);
tagList.Add(privateTagSS);
dataSet[privateTagTM].AppendDateTime(DateTime.Now);
dataSet[privateTagTM].AppendDateTime(DateTime.Now);
tagList.Add(privateTagTM);
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
dataSet[privateTagUI].AppendUid(DicomUid.GenerateUid());
tagList.Add(privateTagUI);
dataSet[privateTagUL].AppendUInt32(128);
dataSet[privateTagUL].AppendUInt32(1024);
dataSet[privateTagUL].AppendUInt32(16384);
dataSet[privateTagUL].AppendUInt32(123123123);
tagList.Add(privateTagUL);
dataSet[privateTagUS].AppendUInt16(128);
dataSet[privateTagUS].AppendUInt16(64);
dataSet[privateTagUS].AppendUInt16(256);
tagList.Add(privateTagUS);
dataSet[privateTagUT].SetStringValue("A man, a plan, a canal, panama.");
tagList.Add(privateTagUT);
dataSet[privateTagOB].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06 };
tagList.Add(privateTagOB);
dataSet[privateTagOW].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06 };
tagList.Add(privateTagOW);
dataSet[privateTagOF].Values = new[] { 1.1111f, 2.222f, 3.3333f, 44444.444f, 5555.555f, 66666.66666f, 123123.123123f };
tagList.Add(privateTagOF);
DicomSequenceItem item = new DicomSequenceItem();
item[DicomTags.PhotometricInterpretation].AppendString("MONOCHROME1");
item[DicomTags.Rows].AppendUInt16(256);
item[DicomTags.Columns].AppendUInt16(256);
item[DicomTags.BitsAllocated].AppendUInt16(8);
item[DicomTags.BitsStored].AppendUInt16(8);
item[DicomTags.HighBit].AppendUInt16(7);
item[DicomTags.PixelData].Values = new byte[] { 0x01, 0x02, 0x03, 0x04, 0x05, 0x06 };
dataSet[privateTagSQ].AddSequenceItem(item);
// SQ Attribute UN parsing does not work right now, don't add to the list.
//tagList.Add(privateTagSQ);
}
protected static IList <DicomAttributeCollection> Query(IApplicationEntity server, DicomAttributeCollection requestCollection)
{
//special case code for ModalitiesInStudy. An IStudyFinder must accept a multi-valued
//string for ModalitiesInStudy (e.g. "MR\\CT") and process it appropriately for the
//datasource that is being queried. In this case (Dicom) does not allow multiple
//query keys, so we have to execute one query per modality specified in the
//ModalitiesInStudy query item.
List <string> modalityFilters = new List <string>();
if (requestCollection.Contains(DicomTags.ModalitiesInStudy))
{
string modalityFilterString = requestCollection[DicomTags.ModalitiesInStudy].ToString();
if (!String.IsNullOrEmpty(modalityFilterString))
{
modalityFilters.AddRange(modalityFilterString.Split(new char[] { '\\' }, StringSplitOptions.RemoveEmptyEntries));
}
if (modalityFilters.Count == 0)
{
modalityFilters.Add(""); //make sure there is at least one filter, the default.
}
}
SortedList <string, DicomAttributeCollection> resultsByStudy = new SortedList <string, DicomAttributeCollection>();
string combinedFilter = requestCollection[DicomTags.ModalitiesInStudy];
try
{
foreach (string modalityFilter in modalityFilters)
{
using (StudyRootFindScu scu = new StudyRootFindScu())
{
requestCollection[DicomTags.ModalitiesInStudy].SetStringValue(modalityFilter);
IList <DicomAttributeCollection> results = scu.Find(
DicomServer.AETitle, server.AETitle, server.ScpParameters.HostName, server.ScpParameters.Port, requestCollection);
scu.Join(new TimeSpan(0, 0, 0, 0, 1000));
if (scu.Status == ScuOperationStatus.Canceled)
{
String message = String.Format(SR.MessageFormatRemoteServerCancelledFind,
scu.FailureDescription ?? "no failure description provided");
throw new DicomException(message);
}
if (scu.Status == ScuOperationStatus.ConnectFailed)
{
String message = String.Format(SR.MessageFormatConnectionFailed,
scu.FailureDescription ?? "no failure description provided");
throw new DicomException(message);
}
else if (scu.Status == ScuOperationStatus.AssociationRejected)
{
String message = String.Format(SR.MessageFormatAssociationRejected,
scu.FailureDescription ?? "no failure description provided");
throw new DicomException(message);
}
if (scu.Status == ScuOperationStatus.Failed)
{
String message = String.Format(SR.MessageFormatQueryOperationFailed,
scu.FailureDescription ?? "no failure description provided");
throw new DicomException(message);
}
if (scu.Status == ScuOperationStatus.TimeoutExpired)
{
String message = String.Format(SR.MessageFormatConnectTimeoutExpired,
scu.FailureDescription ?? "no failure description provided");
throw new DicomException(message);
}
if (scu.Status == ScuOperationStatus.NetworkError)
{
throw new DicomException(SR.MessageUnexpectedNetworkError);
}
if (scu.Status == ScuOperationStatus.UnexpectedMessage)
{
throw new DicomException(SR.MessageUnexpectedMessage);
}
//if this function returns true, it means that studies came back whose
//modalities did not match the filter, meaning that filtering on
//ModalitiesInStudy is not supported by that server.
if (FilterResultsByModality(results, resultsByStudy, modalityFilter))
{
break;
}
}
}
return(new List <DicomAttributeCollection>(resultsByStudy.Values));
}
finally
{
//for consistencies sake, put the original filter back.
requestCollection[DicomTags.ModalitiesInStudy].SetStringValue(combinedFilter);
}
}
public void StandardAttributeTest()
{
DicomFile file = new DicomFile("UNTest.dcm");
DicomAttributeCollection dataSet = file.DataSet;
SetupMetaInfo(file);
SetupMR(dataSet);
dataSet[DicomTags.RetrieveAeTitle].SetStringValue("TESTAE");
dataSet[DicomTags.RetrieveAeTitle].AppendString("TESTAE2");
dataSet[DicomTags.RetrieveAeTitle].AppendString("TESTAE3");
dataSet[DicomTags.RetrieveAeTitle].AppendString("TESTAE4");
dataSet[DicomTags.InstitutionAddress].SetStringValue("1224 Milwaukee Ave.");
dataSet[DicomTags.TimeRange].SetFloat32(0, 1.111111f);
dataSet[DicomTags.TimeRange].AppendFloat32(2.222222f);
dataSet[DicomTags.RecommendedDisplayFrameRateInFloat].AppendFloat32(2.222222f);
dataSet[DicomTags.ReferencePixelX0].AppendInt32(101010);
dataSet[DicomTags.VerticesOfThePolygonalExposureControlSensingRegion].AppendInt16(324);
dataSet[DicomTags.VerticesOfThePolygonalExposureControlSensingRegion].AppendInt16(111);
dataSet[DicomTags.VerticesOfThePolygonalExposureControlSensingRegion].AppendInt16(1234);
dataSet[DicomTags.DimensionIndexValues].AppendInt32(123456);
dataSet[DicomTags.DimensionIndexValues].AppendInt32(789);
dataSet[DicomTags.DimensionIndexValues].AppendInt32(98765);
dataSet[DicomTags.PixelDataProviderUrl].SetStringValue("http://www.clearcanvas.ca");
dataSet[DicomTags.EncapsulatedDocument].Values = new byte[] { 0x00, 0x01, 0x02, 0x03, 0x04, 0x05, 0x06, 0x07 };
dataSet[DicomTags.VectorGridData].Values = new[] { 1234f, .01010f, 31231.31231f, 41414.4141414f };
DicomAttributeCollection originalDataSet = file.DataSet.Copy();
DicomAttributeCollection originalMetaInfo = file.MetaInfo.Copy();
DicomFile originalFile = new DicomFile("", originalMetaInfo, originalDataSet);
// Force a sampling of tags to UN
ConvertAttributeToUN(dataSet, DicomTags.RetrieveAeTitle); // AE
ConvertAttributeToUN(dataSet, DicomTags.PatientsAge); // AS
ConvertAttributeToUN(dataSet, DicomTags.TimeRange); // FD
ConvertAttributeToUN(dataSet, DicomTags.RecommendedDisplayFrameRateInFloat); // FL
ConvertAttributeToUN(dataSet, DicomTags.Modality); // CS
ConvertAttributeToUN(dataSet, DicomTags.SeriesDate); // DA
ConvertAttributeToUN(dataSet, DicomTags.PatientsWeight); // DS
ConvertAttributeToUN(dataSet, DicomTags.AcquisitionDatetime); // DT
ConvertAttributeToUN(dataSet, DicomTags.EchoTrainLength); // IS
ConvertAttributeToUN(dataSet, DicomTags.Manufacturer); // LO
ConvertAttributeToUN(dataSet, DicomTags.ImageComments); // LT
ConvertAttributeToUN(dataSet, DicomTags.EncapsulatedDocument); // OB
ConvertAttributeToUN(dataSet, DicomTags.VectorGridData); // OF
ConvertAttributeToUN(dataSet, DicomTags.ReferringPhysiciansName); // PN
ConvertAttributeToUN(dataSet, DicomTags.AccessionNumber); // SH
ConvertAttributeToUN(dataSet, DicomTags.ReferencePixelX0); // SL
ConvertAttributeToUN(dataSet, DicomTags.VerticesOfThePolygonalExposureControlSensingRegion); // SS
ConvertAttributeToUN(dataSet, DicomTags.InstitutionAddress); // ST
ConvertAttributeToUN(dataSet, DicomTags.SeriesTime); // TM
ConvertAttributeToUN(dataSet, DicomTags.StudyInstanceUid); // UI
ConvertAttributeToUN(dataSet, DicomTags.DimensionIndexValues); // UL
ConvertAttributeToUN(dataSet, DicomTags.SamplesPerPixel); // US
ConvertAttributeToUN(dataSet, DicomTags.PixelDataProviderUrl); // UT
// Explicit Big
file.TransferSyntax = TransferSyntax.ExplicitVrBigEndian;
file.Save();
DicomFile newFile = new DicomFile(file.Filename);
newFile.Load(DicomReadOptions.UseDictionaryForExplicitUN);
List <DicomAttributeComparisonResult> results = new List <DicomAttributeComparisonResult>();
bool compare = originalFile.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
// Explicit Little
file.TransferSyntax = TransferSyntax.ExplicitVrLittleEndian;
file.Save();
newFile = new DicomFile(file.Filename);
newFile.Load(DicomReadOptions.UseDictionaryForExplicitUN);
results = new List <DicomAttributeComparisonResult>();
compare = originalFile.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
// Implicit Little
file.TransferSyntax = TransferSyntax.ImplicitVrLittleEndian;
file.Save();
newFile = new DicomFile(file.Filename);
newFile.Load(DicomReadOptions.UseDictionaryForExplicitUN);
results = new List <DicomAttributeComparisonResult>();
compare = originalFile.DataSet.Equals(newFile.DataSet, ref results);
Assert.IsTrue(compare, results.Count > 0 ? CollectionUtils.FirstElement(results).Details : string.Empty);
}
/// <summary>
/// Constructs a new <see cref="DicomMessageSopDataSource"/>.
/// </summary>
/// <param name="sourceMessage">The source <see cref="DicomMessageBase"/> which provides all the SOP instance data.</param>
protected DicomMessageSopDataSource(DicomMessageBase sourceMessage)
{
_dummy = new DicomAttributeCollection();
SetSourceMessage(sourceMessage);
}
protected StringDicomPropertyFilter(uint tag, DicomAttributeCollection criteria)
: this(new DicomTagPath(tag), criteria)
{
}