public frm2DPeakProcessing()
{
//
// Required for Windows Form Designer support
//
InitializeComponent();
//
// TODO: Add any constructor code after InitializeComponent call
//
mobj_raw_data = null;
Init();
}
private void Init()
{
try
{
var shape = new PNNL.Controls.DiamondShape(3, false);
mobj_tic_plt_params = new PNNL.Controls.clsPlotParams(shape, Color.Red, false, true, true);
mobj_bpi_plt_params = new PNNL.Controls.clsPlotParams(shape, Color.Blue, false, true, true);
m_tic_chart_data_provider = new PNNL.Controls.ArrayChartDataProvider();
m_bpi_chart_data_provider = new PNNL.Controls.ArrayChartDataProvider();
mobjRawData = new DeconToolsV2.Readers.clsRawData();
}
catch (Exception ex)
{
MessageBox.Show(this, ex.Message);
}
}
private void LinkRawFile()
{
var selectRawFile = new frmSelectRaw();
if (mobj_results.FileType != DeconToolsV2.Readers.FileType.UNDEFINED)
{
selectRawFile.FileType = mobj_results.FileType;
selectRawFile.FileName = mobj_results.FileName;
}
selectRawFile.Text = "Please Select a Raw File";
if (selectRawFile.ShowDialog() == DialogResult.Cancel)
{
return;
}
mobj_raw_data = new DeconToolsV2.Readers.clsRawData(selectRawFile.FileName, selectRawFile.FileType);
mctl_spectrum.RawData = mobj_raw_data;
}
private void Init()
{
try
{
mctl_spectrum = new ctlMassSpectrum();
mctl_spectrum.Dock = DockStyle.Fill;
panel1.Controls.Add(mctl_spectrum);
mctl_spectrum.Mediator = mMediator;
mctl_spectrum.mevntScanChanged += new Decon2LS.ctlMassSpectrum.ScanChangedEventHandler(mctl_spectrum_mevntScanChanged);
marr_tic_values = new float[1];
marr_scan_times = new float[1];
this.m_tic_current_scan_pen_provider = new PenProvider();
m_tic_current_scan_pen_provider.DashStyle = System.Drawing.Drawing2D.DashStyle.Dash;
var shape = new PNNL.Controls.DiamondShape(3, false);
mobj_tic_plt_params = new PNNL.Controls.clsPlotParams(shape, Color.DarkSlateGray, false, true, true);
this.KeyDown += new KeyEventHandler(frmSpectra_KeyDown);
this.mctl_tic.KeyDown += new KeyEventHandler(frmSpectra_KeyDown);
this.mctl_spectrum.KeyDown += new KeyEventHandler(frmSpectra_KeyDown);
mint_spectrum_num = -1;
this.m_tic_chart_data_provider = new ArrayChartDataProvider();
this.mobj_tic_series = new clsSeries(this.m_tic_chart_data_provider, this.mobj_tic_plt_params);
this.mctl_tic.SeriesCollection.Add(mobj_tic_series);
// Set category info
this.Category = new CategoryInfo[] { frmSpectra.MainCategory, new CategoryInfo("Unopened") };
this.CategorizedText = "Unopened";
mobjRawData = new DeconToolsV2.Readers.clsRawData();
mctl_tic.DefaultZoomHandler.SingleClickNoZoomPerformed += new SingleClickNoZoomHandler(TicDefaultZoomHandler_SingleClickNoZoomPerformed);
this.frmSpectra_Resize(this, null);
}
catch (Exception ex)
{
MessageBox.Show(this, ex.Message);
}
}
public BrukerV2Run(string folderName)
: this()
{
validateSelectionIsFolder(folderName);
DatasetFileOrDirectoryPath = folderName;
var serFileInfo = findSerFile();
var fidFileInfo = findFIDFile();
string filePathForDeconEngine;
if (serFileInfo == null && fidFileInfo == null)
{
throw new FileNotFoundException("Run initialization problem. Could not find a 'ser' or 'fid' file within the directory structure.");
}
//if there is a ser file, 'fid' files will be ignored.
if (serFileInfo != null)
{
filePathForDeconEngine = serFileInfo.FullName;
}
else if (serFileInfo == null && fidFileInfo != null)
{
filePathForDeconEngine = fidFileInfo.FullName;
}
else
{
throw new FileNotFoundException("Run initialization problem. Could not find a 'ser' or 'fid' file within the directory structure.");
}
var settingsfileInfo = findSettingsFile();
if (settingsfileInfo == null)
{
throw new FileNotFoundException("Run initialization problem. Could not find the settings file ('apexAcquisition.method') within the directory structure.");
}
SettingsFilePath = settingsfileInfo.FullName;
DatasetName = GetDatasetName(DatasetFileOrDirectoryPath);
DatasetDirectoryPath = GetDatasetFolderName(DatasetFileOrDirectoryPath);
loadSettings(SettingsFilePath);
try
{
rawData = new DeconToolsV2.Readers.clsRawData();
rawData.LoadFile(filePathForDeconEngine, DeconToolsV2.Readers.FileType.BRUKER);
}
catch (Exception ex)
{
throw new Exception("ERROR: Couldn't open the file. Details: " + ex.Message);
}
Check.Ensure(rawData != null, "Run initialization problem. Details: DeconEngine tried to load the file but failed.");
applySettings();
Check.Ensure(rawData != null, "Run initialization problem. Details: Run was loaded but after FFT settings were applied, there was a problem.");
MinLCScan = GetMinPossibleLCScanNum(); // remember that DeconEngine is 1-based
MaxLCScan = GetMaxPossibleLCScanNum();
Check.Ensure(MaxLCScan != 0, "Run initialization problem. Details: When initializing the run, the run's maxScan was determined to be '0'. Probably a run accessing error.");
}