public void TestOpen()
{
var reader = DataFileReaderFactory.Create(DataFileType.csv);
List <Signal> signals = reader.Read("Data\\ExData_20170203_000800.csv");
Assert.IsNotNull(signals);
}
public void TestRead2()
{
// Read in file and compare with known results
CSVFileReader reader = (CSVFileReader)DataFileReaderFactory.Create(DataFileType.csv);
List <Signal> signals = reader.Read2("Data\\ExData_20170203_000800.csv");
Assert.IsNotNull(signals);
Assert.AreEqual(signals.Count, 8);
Assert.AreEqual(signals[0].Data.Count, 1800);
}
public void TestRead()
{
// Read in file and compare with known results
var reader = DataFileReaderFactory.Create(DataFileType.csv);
//Console.WriteLine(Environment.CurrentDirectory);
List <Signal> signals = reader.Read("Data\\ExData_20170203_000800.csv");
Assert.IsNotNull(signals);
Assert.AreEqual(signals.Count, 8);
Assert.AreEqual(signals[0].Data.Count, 1800);
}
public void Init()
{
var reader = DataFileReaderFactory.Create(DataFileType.csv);
//Console.WriteLine(Environment.CurrentDirectory);
signals = reader.Read("Data\\SpectralInpectionData.csv");
data = new List <List <double> >();
foreach (var sig in signals)
{
data.Add(sig.Data);
}
}
public SpectrumMatchList(string fileName, int maxCharge = 0, bool useDecoy = false)
{
Decoy = useDecoy;
MaxCharge = maxCharge;
SequenceFormat = DataFileFormat.Mgf;
var fileReader = DataFileReaderFactory.Create(SequenceFormat, fileName, useDecoy);
var specMatches = fileReader.Read();
AddRange(from i in specMatches
where i.PrecursorCharge <= maxCharge
select i);
}
public SpectrumMatchList(LazyLcMsRun lcms, string tsvFile, DataFileFormat sequenceFormat,
int maxCharge = 0, bool useDecoy = false)
{
Decoy = useDecoy;
MaxCharge = maxCharge;
SequenceFormat = sequenceFormat;
var fileReader = DataFileReaderFactory.Create(SequenceFormat, tsvFile, useDecoy, lcms);
var specMatches = fileReader.Read();
AddRange(from i in specMatches
where i.PrecursorCharge <= maxCharge
select i);
}
public void TestCreate()
{
var reader = DataFileReaderFactory.Create(DataFileType.csv);
Assert.IsNotNull(reader, "Factory created null csv reader");
}