public string ConvertV2ToBetaSearch(string RDFResults, string queryid, string version, bool individual)
{
System.Text.StringBuilder returnxml = new System.Text.StringBuilder();
XmlDocument RDF = new XmlDocument();
Utility.Namespace namespacemgr = new Connects.Profiles.Utility.Namespace();
XmlNamespaceManager namespaces;
string uri = string.Empty;
string affiliationuri = string.Empty;
string xpathbufferDepartment = string.Empty;
string topnode = string.Empty;
RDF.LoadXml(RDFResults);
namespaces = namespacemgr.LoadNamespaces(RDF);
int count = 0;
XmlNode pub = null;
List<CustomPub> custompubs;
XmlNodeList persons;
Int64 currentnode = 0;
PersonData persondata;
bool bynodeid = false;
if (RDF.SelectNodes("//prns:hasConnection[@rdf:nodeID!='']", namespaces) != null && RDF.SelectSingleNode("rdf:RDF/rdf:Description[1]/@rdf:about", namespaces) == null)
bynodeid = true;
if (individual && !bynodeid)
{
persons = RDF.SelectNodes("//rdf:RDF", namespaces);
}
else
{
persons = RDF.SelectNodes("//prns:hasConnection[@rdf:nodeID!='']", namespaces);
}
foreach (XmlNode person in persons)
{
if (individual && !bynodeid)
{
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[1]/@rdf:about", namespaces) != null)
{
uri = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[1]/@rdf:about", namespaces).Value;
returnxml.Append("<Person QueryRelevance=\"1\" Visible=\"true\">");
}
}
else
{
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/rdf:object/@rdf:resource", namespaces) != null)
{
uri = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/rdf:object/@rdf:resource", namespaces).Value;
returnxml.Append("<Person QueryRelevance=\"" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/prns:connectionWeight", namespaces).InnerText + "\" Visible=\"true\">");
}
else
{
returnxml.Append("<Person QueryRelevance=\"" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/prns:connectionWeight", namespaces).InnerText + "\" Visible=\"true\">");
}
}
if (uri != string.Empty)
{
currentnode = Convert.ToInt64(uri.Split('/')[uri.Split('/').Length - 1]);
if (version == "2")
{
returnxml.Append("<PersonID>" + this.GetPersonID(currentnode).ToString() + "</PersonID>");
}
else
{
returnxml.Append("<PersonID>" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/catalyst:eCommonsLogin", namespaces).InnerText + "</PersonID>");
}
persondata = this.GetPersonData(this.GetPersonID(currentnode));
//NAME
returnxml.Append("<Name>");
returnxml.Append("<FullName>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:fullName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</FullName>");
returnxml.Append("<FirstName>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/foaf:firstName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/foaf:firstName", namespaces).InnerText);
returnxml.Append("</FirstName>");
returnxml.Append("<LastName>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/foaf:lastName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/foaf:lastName", namespaces).InnerText);
returnxml.Append("</LastName>");
returnxml.Append("</Name>");
//END NAME
/*
returnxml.Append("<InternalIDList>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/catalyst:eCommonsLogin", namespaces) != null)
{
returnxml.Append("<InternalID Name=\"EcommonsUsername\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/catalyst:eCommonsLogin", namespaces).InnerText);
returnxml.Append("</InternalID>");
}
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/catalyst:harvardId", namespaces) != null)
{
returnxml.Append("<InternalID Name=\"HarvardID\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/catalyst:harvardId", namespaces).InnerText);
returnxml.Append("</InternalID>");
}
returnxml.Append("</InternalIDList>");
*/
if (version == "2")
{
////ADDRESS
returnxml.Append("<Address>");
returnxml.Append("<Address1>");
returnxml.Append(persondata.AddressLine1);
returnxml.Append("</Address1>");
returnxml.Append("<Address2>");
returnxml.Append(persondata.AddressLine2);
returnxml.Append("</Address2>");
returnxml.Append("<Address3>");
returnxml.Append(persondata.AddressLine3);
returnxml.Append("</Address3>");
returnxml.Append("<Address4>");
returnxml.Append(persondata.AddressLine4);
returnxml.Append("</Address4>");
returnxml.Append("<Telephone>");
returnxml.Append(persondata.Phone);
returnxml.Append("</Telephone>");
returnxml.Append("<Fax>");
returnxml.Append(persondata.Fax);
returnxml.Append("</Fax>");
returnxml.Append("<Latitude>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:latitude", namespaces) != null)
returnxml.Append(Convert.ToDecimal(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:latitude", namespaces).InnerText));
returnxml.Append("</Latitude>");
returnxml.Append("<Longitude>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:longitude", namespaces) != null)
returnxml.Append(Convert.ToDecimal(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:longitude", namespaces).InnerText));
returnxml.Append("</Longitude>");
returnxml.Append("</Address>");
//END ADDRESS
}
returnxml.Append("<AffiliationList Visible=\"true\">");
string organization = string.Empty;
string department = string.Empty;
string primary = string.Empty;
if (RDF.SelectNodes("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/vivo:personInPosition/@rdf:resource", namespaces) != null)
{
try
{
affiliationuri = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:personInPrimaryPosition/@rdf:resource", namespaces).Value;
}
catch (Exception ex) { }
XmlNodeList afflist = null;
if (individual)
{
afflist = RDF.SelectNodes("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/vivo:personInPosition/@rdf:resource", namespaces);
}
else
{
afflist = RDF.SelectNodes("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliationuri + "']", namespaces);
}
foreach (XmlNode affiliation in afflist)
{
if (affiliationuri != string.Empty)
{
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliation.Value + "']/prns:isPrimaryPosition", namespaces) != null && individual)
{
primary = "true";
}
else if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliationuri + "']/prns:isPrimaryPosition", namespaces) != null && !individual)
{
primary = "true";
}
else
{
primary = "false";
}
returnxml.Append("<Affiliation Primary=\"" + primary + "\">");
returnxml.Append("<JobTitle>");
if (individual)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliation.Value + "']/vivo:hrJobTitle", namespaces).InnerText);
else
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliationuri + "']/vivo:hrJobTitle", namespaces).InnerText);
returnxml.Append("</JobTitle>");
returnxml.Append("<InstitutionAbbreviation>");
try
{
if (individual)
organization = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliation.Value + "']/vivo:positionInOrganization/@rdf:resource", namespaces).InnerText;
else
organization = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliationuri + "']/vivo:positionInOrganization/@rdf:resource", namespaces).InnerText;
returnxml.Append(GetInstitutionAbbreviation(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + organization + "']/rdfs:label", namespaces).InnerText));
}
catch (Exception e) { }
returnxml.Append("</InstitutionAbbreviation>");
returnxml.Append("<InstitutionName>");
try
{
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + organization + "']/rdfs:label", namespaces).InnerText);
}
catch (Exception e) { }
returnxml.Append("</InstitutionName>");
returnxml.Append("<DepartmentName>");
try
{
if (individual)
department = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliation.Value + "']/prns:positionInDepartment/@rdf:resource", namespaces).InnerText;
else
department = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + affiliationuri + "']/prns:positionInDepartment/@rdf:resource", namespaces).InnerText;
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + department + "']/rdfs:label", namespaces).InnerText);
}
catch (Exception e) { }
returnxml.Append("</DepartmentName>");
}
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about=/rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:hasFacultyRank/@rdf:resource]/rdfs:label", namespaces) != null)
{
returnxml.Append("<FacultyType>");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about=/rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:hasFacultyRank/@rdf:resource]/rdfs:label", namespaces).InnerText);
returnxml.Append("</FacultyType>");
}
returnxml.Append("</Affiliation>");
}
}
returnxml.Append("</AffiliationList>");
returnxml.Append("<ProfileURL Visible=\"true\">" + uri + "</ProfileURL>");
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/vivo:email", namespaces) != null)
{
returnxml.Append("<EmailImageUrl Visible=\"true\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/vivo:email", namespaces).InnerText);
returnxml.Append("</EmailImageUrl>");
}
else
{
returnxml.Append("<EmailImageUrl/>");
}
if (RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:mainImage/@rdf:resource", namespaces) != null)
{
returnxml.Append("<PhotoUrl Visible=\"true\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + uri + "']/prns:mainImage/@rdf:resource", namespaces).InnerText);
returnxml.Append("</PhotoUrl>");
}
else
{
returnxml.Append("<PhotoUrl/>");
}
returnxml.Append("<BasicStatistics Visible=\"true\">");
returnxml.Append("<PublicationCount>");
returnxml.Append(this.GetPubCount(Convert.ToInt64(uri.Split('/')[uri.Split('/').Length - 1])));
returnxml.Append("</PublicationCount>");
returnxml.Append("<MatchingPublicationCount>0</MatchingPublicationCount>"); //No equlivant to new system
try
{
returnxml.Append("<MatchScore>" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/prns:connectionWeight", namespaces).InnerText + "</MatchScore>");
}
catch (Exception ex) { }
returnxml.Append("</BasicStatistics>");
if (individual)
{
if (version != "2")
returnxml.Append("<Publications>");
returnxml.Append("<PublicationList>");
custompubs = this.GetCustomPubs(currentnode);
foreach (XmlNode publication in RDF.SelectNodes("//vivo:authorInAuthorship", namespaces))
{
try
{
pub = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + publication.SelectSingleNode("@rdf:resource", namespaces).Value + "']/vivo:linkedInformationResource/@rdf:resource", namespaces).Value + "']", namespaces);
}
catch (Exception ex) { pub = null; }
if (pub != null)
{
if (pub.SelectSingleNode("bibo:pmid", namespaces) != null)
returnxml.Append("<Publication CustomCategory='' Type='PubMed' Visible='true'>");
else
returnxml.Append("<Publication CustomCategory='' Type='Custom' Visible='true'>");
returnxml.Append("<PublicationID>");
returnxml.Append(publication.SelectSingleNode("@rdf:resource", namespaces).Value);
returnxml.Append("</PublicationID>");
returnxml.Append("<PublicationReference>");
returnxml.Append(((pub.SelectSingleNode("prns:informationResourceReference", namespaces).InnerText).Replace("<", "<").Replace(">", ">")));
returnxml.Append("</PublicationReference>");
returnxml.Append("<PublicationMatchDetailList>");
returnxml.Append("</PublicationMatchDetailList>");
if (version == "2")
{
returnxml.Append("<PublicationSourceList>");
if (pub.SelectSingleNode("bibo:pmid", namespaces) != null)
{
returnxml.Append("<PublicationSource ID='" + pub.SelectSingleNode("bibo:pmid", namespaces).InnerText + "' URL='" + "http://www.ncbi.nlm.nih.gov/pubmed/" + pub.SelectSingleNode("bibo:pmid", namespaces).InnerText + "' Primary='true' Name='PubMed'/>");
}
returnxml.Append("</PublicationSourceList>");
}
else
{
returnxml.Append("<PublicationURL>");
try
{
returnxml.Append("http://www.ncbi.nlm.nih.gov/pubmed/" + pub.SelectSingleNode("bibo:pmid", namespaces).InnerText);
}
catch (Exception ex) { }
returnxml.Append("</PublicationURL>");
returnxml.Append("<PubMedID>");
try
{
returnxml.Append(pub.SelectSingleNode("bibo:pmid", namespaces).InnerText);
}
catch (Exception ex) { }
returnxml.Append("</PubMedID>");
returnxml.Append("<PublicationSourceList/>");
}
returnxml.Append("</Publication>");
pub = null;
}
}
returnxml.Append("</PublicationList>");
if (version != "2")
returnxml.Append("</Publications>");
}
if (individual)
{
returnxml.Append("<PassiveNetworks>");
returnxml.Append("<SimilarPersonList TotalSimilarPeopleCount=\"" + RDF.SelectNodes("rdf:RDF[1]/rdf:Description/prns:similarTo", namespaces).Count + "\">");
foreach (XmlNode similarto in RDF.SelectNodes("rdf:RDF[1]/rdf:Description/prns:similarTo", namespaces))
{
if (similarto.SelectSingleNode("@rdf:resource", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(similarto.SelectSingleNode("@rdf:resource", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<SimilarPerson PersonID=\"" + this.GetPersonID(currentnode) + "\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + similarto.SelectSingleNode("@rdf:resource", namespaces).Value + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</SimilarPerson>");
}
}
returnxml.Append("</SimilarPersonList>");
returnxml.Append("<CoAuthorList TotalCoAuthorCount=\"" + RDF.SelectNodes("rdf:RDF/rdf:Description[1]/vivo:authorInAuthorship", namespaces).Count + "\">");
foreach (XmlNode coauthorpub in RDF.SelectNodes("rdf:RDF/rdf:Description[@rdf:about= /rdf:RDF[1]/rdf:Description[1]/prns:coAuthorOf/@rdf:resource][position() < 5]", namespaces))
{
if (coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<CoAuthor PersonID=\"" + this.GetPersonID(currentnode) + "\" Institution=\"" + (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value + "']/prns:personInPrimaryPosition/@rdf:resource", namespaces).Value + "']/rdfs:label", namespaces)).InnerText + "\">");
returnxml.Append(coauthorpub.SelectSingleNode("rdfs:label", namespaces).InnerText);
returnxml.Append("</CoAuthor>");
}
}
returnxml.Append("</CoAuthorList>");
returnxml.Append("<NeighborList>");
foreach (XmlNode neighbor in RDF.SelectNodes("rdf:RDF/rdf:Description[1]/prns:physicalNeighborOf", namespaces))
{
if (neighbor.SelectSingleNode("@rdf:resource", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(neighbor.SelectSingleNode("@rdf:resource", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<Neighbor PersonID=\"" + this.GetPersonID(currentnode) + "\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + neighbor.SelectSingleNode("@rdf:resource", namespaces).Value + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</Neighbor>");
}
}
returnxml.Append("</NeighborList>");
returnxml.Append("<KeywordList TotalKeywordCount=\"" + RDF.SelectNodes("rdf:RDF/rdf:Description[1]/vivo:hasResearchArea", namespaces).Count + "\">");
foreach (XmlNode keyword in RDF.SelectNodes("rdf:RDF/rdf:Description[1]/vivo:hasResearchArea", namespaces))
{
returnxml.Append("<Keyword>");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:about='" + keyword.SelectSingleNode("@rdf:resource", namespaces).Value + "']/rdfs:label", namespaces).InnerText);
returnxml.Append("</Keyword>");
}
returnxml.Append("</KeywordList>");
returnxml.Append("</PassiveNetworks>");
}
returnxml.Append("</Person>");
count++;
}
else
{
if (person.SelectSingleNode("@rdf:nodeID", namespaces) != null)
returnxml.Append("<PersonID>" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/rdf:object/@rdf:nodeID", namespaces).Value + "']/prns:personId", namespaces).InnerText + "</PersonID></Person>");
}
}
string complete = "false";
string totalcount = string.Empty;
if (!individual)
{
if (count.ToString() == RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description/prns:numberOfConnections", namespaces).InnerText)
complete = "true";
totalcount = RDF.SelectSingleNode("rdf:RDF[1]/rdf:Description/prns:numberOfConnections", namespaces).InnerText;
}
else
{
count = 1;
totalcount = count.ToString();
complete = "true";
}
topnode = "<?xml version=\"1.0\"?><PersonList Complete=\"" + complete + "\" ThisCount=\"" + count.ToString() + "\" TotalCount=\"" +
totalcount + "\" QueryID=\"" +
queryid + "\" xmlns=\"http://connects.profiles.schema/profiles/personlist\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"" +
" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\">";
returnxml.Append("</PersonList>");
string returnstring = (topnode + returnxml.ToString()).Replace("&", "&");
return returnstring;
}
public Connects.Profiles.Service.DataContracts.PersonList ProfileSearch(Connects.Profiles.Service.DataContracts.Profiles qd, bool isSecure)
{
Connects.Profiles.Service.DataContracts.PersonList pl = null;
string req = string.Empty;
string responseXML = string.Empty;
try
{
DataIO ps = new DataIO();
XmlDocument searchrequest = new XmlDocument();
Utility.Namespace namespacemgr = new Connects.Profiles.Utility.Namespace();
Connects.Profiles.Service.DataContracts.Profiles p = new Connects.Profiles.Service.DataContracts.Profiles();
req = Connects.Profiles.Utility.XmlUtilities.SerializeToString(qd);
DebugLogging.Log("+++++++++ REQUEST=" + req);
Type type = typeof(Connects.Profiles.Service.DataContracts.PersonList);
searchrequest.LoadXml(this.ConvertToRDFRequest(req, qd.Version.ToString()));
if (qd.QueryDefinition.PersonID != null && qd.Version != 2)
{
qd.QueryDefinition.PersonID = ps.GetPersonID(qd.QueryDefinition.PersonID).ToString();
}
if (qd.QueryDefinition.PersonID != null)
{
responseXML = ps.Search(qd.QueryDefinition.PersonID, isSecure).OuterXml;
}
else
{
responseXML = ps.Search(searchrequest, isSecure).OuterXml;
}
string queryid = string.Empty;
queryid = qd.QueryDefinition.QueryID;
if (responseXML == string.Empty)
{
if (queryid == null)
{
queryid = Guid.NewGuid().ToString();
}
responseXML = "<PersonList Complete=\"true\" ThisCount=\"0\" TotalCount=\"0\" QueryID=\"" + queryid + "\" xmlns=\"http://connects.profiles.schema/profiles/personlist\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\" />";
}
else
{
string version = string.Empty;
bool individual = false;
version = qd.Version.ToString();
if (qd.QueryDefinition.PersonID != null || qd.QueryDefinition.InternalIDList != null)
{
individual = true;
}
responseXML = ps.ConvertV2ToBetaSearch(responseXML, queryid, version, individual);
}
DebugLogging.Log("+++++++++ DONE WITH Convert V2 to Beta Search");
pl = Connects.Profiles.Utility.XmlUtilities.DeserializeObject(responseXML, type) as Connects.Profiles.Service.DataContracts.PersonList;
DebugLogging.Log("+++++++++ Returned + a total count of = " + pl.TotalCount);
}
catch (Exception ex)
{
DebugLogging.Log(req + " " + responseXML);
DebugLogging.Log("ERROR==> " + ex.Message + " STACK:" + ex.StackTrace + " SOURCE:" + ex.Source);
}
return(pl);
}
public string ConvertV2ToBetaSearch(string RDFResults, string queryid, string version, bool individual)
{
System.Text.StringBuilder returnxml = new System.Text.StringBuilder();
XmlDocument RDF = new XmlDocument();
Utility.Namespace namespacemgr = new Connects.Profiles.Utility.Namespace();
XmlNamespaceManager namespaces;
string uri = string.Empty;
string affiliationuri = string.Empty;
string xpathbufferDepartment = string.Empty;
string topnode = string.Empty;
RDF.LoadXml(RDFResults);
namespaces = namespacemgr.LoadNamespaces(RDF);
int count = 0;
XmlNode pub;
List<CustomPub> custompubs;
XmlNodeList persons;
Int64 currentnode = 0;
PersonData persondata;
if (individual)
{
persons = RDF.SelectNodes("//rdf:RDF", namespaces);
}
else
{
persons = RDF.SelectNodes("//prns:hasConnection[@rdf:nodeID!='']", namespaces);
}
foreach (XmlNode person in persons)
{
if (individual)
{
uri = RDF.SelectSingleNode("rdf:RDF/rdf:Description/@rdf:about", namespaces).Value;
returnxml.Append("<Person QueryRelevance=\"1\" Visible=\"true\">");
}
else
{
uri = RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/rdf:object/@rdf:resource", namespaces).Value;
returnxml.Append("<Person QueryRelevance=\"" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/prns:connectionWeight", namespaces).InnerText + "\" Visible=\"true\">");
}
currentnode = Convert.ToInt64(uri.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<PersonID>" + this.GetPersonID(currentnode).ToString() + "</PersonID>");
persondata = this.GetPersonData(this.GetPersonID(currentnode));
//NAME
returnxml.Append("<Name>");
returnxml.Append("<FullName>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:fullName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</FullName>");
returnxml.Append("<FirstName>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/foaf:firstName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/foaf:firstName", namespaces).InnerText);
returnxml.Append("</FirstName>");
returnxml.Append("<LastName>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/foaf:lastName", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/foaf:lastName", namespaces).InnerText);
returnxml.Append("</LastName>");
returnxml.Append("</Name>");
//END NAME
// <InternalIDList>
// <InternalID Name="EcommonsUsername">GMW3</InternalID>
// </InternalIDList>
////ADDRESS
returnxml.Append("<Address>");
returnxml.Append("<Address1>");
returnxml.Append(persondata.AddressLine1);
returnxml.Append("</Address1>");
returnxml.Append("<Address2>");
returnxml.Append(persondata.AddressLine2);
returnxml.Append("</Address2>");
returnxml.Append("<Address3>");
returnxml.Append(persondata.AddressLine3);
returnxml.Append("</Address3>");
returnxml.Append("<Address4>");
returnxml.Append(persondata.AddressLine4);
returnxml.Append("</Address4>");
returnxml.Append("<Telephone>");
returnxml.Append(persondata.Phone);
returnxml.Append("</Telephone>");
returnxml.Append("<Fax>");
returnxml.Append(persondata.Fax);
returnxml.Append("</Fax>");
returnxml.Append("<Latitude>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:latitude", namespaces) != null)
returnxml.Append(Convert.ToDecimal(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:latitude", namespaces).InnerText));
returnxml.Append("</Latitude>");
returnxml.Append("<Longitude>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:longitude", namespaces) != null)
returnxml.Append(Convert.ToDecimal(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:longitude", namespaces).InnerText));
returnxml.Append("</Longitude>");
returnxml.Append("</Address>");
//END ADDRESS
// NARRATIVE (UCSF)
returnxml.Append("<Narrative>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/vivo:overview", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/vivo:overview", namespaces).InnerText);
returnxml.Append("</Narrative>");
// END NARRATIVE
// PHOTOURL (UCSF)
returnxml.Append("<PhotoUrl>");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:mainImage/@rdf:resource", namespaces) != null)
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:mainImage/@rdf:resource", namespaces).InnerText);
returnxml.Append("</PhotoUrl>");
// END PHOTOURL
returnxml.Append("<AffiliationList Visible=\"true\">");
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:personInPrimaryPosition/@rdf:resource", namespaces) != null)
affiliationuri = RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + uri + "']/prns:personInPrimaryPosition/@rdf:resource", namespaces).Value;
foreach (XmlNode affiliation in RDF.SelectNodes("rdf:RDF/rdf:Description[@rdf:about='" + affiliationuri + "']", namespaces))
{
if (affiliationuri != string.Empty)
{
returnxml.Append("<Affiliation Primary=\"" + affiliation.SelectSingleNode("prns:isPrimaryPosition", namespaces).InnerText + "\">");
returnxml.Append("<JobTitle>");
returnxml.Append(affiliation.SelectSingleNode("vivo:hrJobTitle", namespaces).InnerText);
returnxml.Append("</JobTitle>");
returnxml.Append("<InstitutionAbbreviation>");
returnxml.Append("</InstitutionAbbreviation>");
returnxml.Append("<InstitutionName>");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" +
affiliation.SelectSingleNode("vivo:positionInOrganization/@rdf:resource", namespaces).Value + "']", namespaces).InnerText);
returnxml.Append("</InstitutionName>");
returnxml.Append("<DepartmentName>");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" +
affiliation.SelectSingleNode("prns:positionInDepartment/@rdf:resource", namespaces).Value + "']", namespaces).InnerText);
returnxml.Append("</DepartmentName>");
}
if (affiliation.SelectSingleNode("prns:hasFacultyRank", namespaces) != null)
{
returnxml.Append("<FacultyType>");
returnxml.Append(RDF.SelectSingleNode("rdf:Description[@rdf:about='" +
affiliation.SelectSingleNode("prns:hasFacultyRank", namespaces).InnerText + "']/rdfs:label", namespaces).InnerText);
returnxml.Append("</FacultyType>");
}
returnxml.Append("</Affiliation>");
}
returnxml.Append("</AffiliationList>");
returnxml.Append("<ProfileURL Visible=\"true\">" + uri + "</ProfileURL>");
returnxml.Append("<BasicStatistics Visible=\"true\">");
returnxml.Append("<PublicationCount>");
returnxml.Append(this.GetPubCount(Convert.ToInt64(uri.Split('/')[uri.Split('/').Length - 1])));
returnxml.Append("</PublicationCount>");
returnxml.Append("<MatchingPublicationCount>0</MatchingPublicationCount>"); //No equlivant to new system
if (!individual)
returnxml.Append("<MatchScore>" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:nodeID='" + person.SelectSingleNode("@rdf:nodeID", namespaces).Value + "']/prns:connectionWeight", namespaces).InnerText + "</MatchScore>");
returnxml.Append("</BasicStatistics>");
if (individual)
{
if (version != "2")
returnxml.Append("<Publications>");
returnxml.Append("<PublicationList>");
custompubs = this.GetCustomPubs(currentnode);
foreach (XmlNode publication in RDF.SelectNodes("//vivo:authorInAuthorship", namespaces))
{
try
{
pub = RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + publication.SelectSingleNode("@rdf:resource", namespaces).Value + "']/vivo:linkedInformationResource/@rdf:resource", namespaces).Value + "']", namespaces);
if (pub.SelectSingleNode("bibo:pmid", namespaces) != null)
returnxml.Append("<Publication CustomCategory='' Type='PubMed' Visible='true'>");
else
returnxml.Append("<Publication CustomCategory='' Type='Custom' Visible='true'>");
returnxml.Append("<PublicationID>");
returnxml.Append(publication.SelectSingleNode("@rdf:resource", namespaces).Value);
returnxml.Append("</PublicationID>");
if (pub.SelectSingleNode("prns:informationResourceReference", namespaces) != null)
{
returnxml.Append("<PublicationReference>");
//returnxml.Append(pub.SelectSingleNode("rdfs:label", namespaces).InnerText);
returnxml.Append(pub.SelectSingleNode("prns:informationResourceReference", namespaces).InnerText.Replace("&", "&").Replace(">", ">").Replace("<", "<").Replace("%", "%"));
returnxml.Append("</PublicationReference>");
}
returnxml.Append("<PublicationMatchDetailList>");
returnxml.Append("</PublicationMatchDetailList>");
returnxml.Append("<PublicationSourceList>");
if (pub.SelectSingleNode("bibo:pmid", namespaces) != null)
{
returnxml.Append("<PublicationSource ID='" + pub.SelectSingleNode("bibo:pmid", namespaces).InnerText + "' URL='" + "http://www.ncbi.nlm.nih.gov/pubmed/" + pub.SelectSingleNode("bibo:pmid", namespaces).InnerText + "' Primary='true' Name='PubMed'/>");
}
returnxml.Append("</PublicationSourceList>");
returnxml.Append("</Publication>");
}
catch (Exception ex)
{
DebugLogging.Log(ex.Message);
DebugLogging.Log(ex.StackTrace);
}
}
returnxml.Append("</PublicationList>");
if (version != "2")
returnxml.Append("</Publications>");
}
if (individual)
{
returnxml.Append("<PassiveNetworks>");
returnxml.Append("<SimilarPersonList TotalSimilarPeopleCount=\"" + RDF.SelectNodes("rdf:RDF/rdf:Description/prns:similarTo", namespaces).Count + "\">");
foreach (XmlNode similarto in RDF.SelectNodes("rdf:RDF/rdf:Description/prns:similarTo", namespaces))
{
if (similarto.SelectSingleNode("@rdf:resource", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(similarto.SelectSingleNode("@rdf:resource", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<SimilarPerson PersonID=\"" + this.GetPersonID(currentnode) + "\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + similarto.SelectSingleNode("@rdf:resource", namespaces).Value + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</SimilarPerson>");
}
}
returnxml.Append("</SimilarPersonList>");
returnxml.Append("<CoAuthorList TotalCoAuthorCount=\"" + RDF.SelectNodes("rdf:RDF/rdf:Description/vivo:authorInAuthorship", namespaces).Count + "\">");
foreach (XmlNode coauthorpub in RDF.SelectNodes("rdf:RDF/rdf:Description[@rdf:about= /rdf:RDF[1]/rdf:Description[1]/prns:coAuthorOf/@rdf:resource][position() < 5]", namespaces))
{
if (coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<CoAuthor PersonID=\"" + this.GetPersonID(currentnode) + "\" Institution=\"" + (RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + coauthorpub.SelectSingleNode("@rdf:about", namespaces).Value + "']/prns:personInPrimaryPosition/@rdf:resource", namespaces).Value + "']/rdfs:label", namespaces)).InnerText + "\">");
returnxml.Append(coauthorpub.SelectSingleNode("rdfs:label", namespaces).InnerText);
returnxml.Append("</CoAuthor>");
}
}
returnxml.Append("</CoAuthorList>");
returnxml.Append("<NeighborList>");
foreach (XmlNode neighbor in RDF.SelectNodes("rdf:RDF/rdf:Description/prns:physicalNeighborOf", namespaces))
{
if (neighbor.SelectSingleNode("@rdf:resource", namespaces).Value != uri)
{
currentnode = Convert.ToInt64(neighbor.SelectSingleNode("@rdf:resource", namespaces).Value.Split('/')[uri.Split('/').Length - 1]);
returnxml.Append("<Neighbor PersonID=\"" + this.GetPersonID(currentnode) + "\">");
returnxml.Append(RDF.SelectSingleNode("rdf:RDF/rdf:Description[@rdf:about='" + neighbor.SelectSingleNode("@rdf:resource", namespaces).Value + "']/prns:fullName", namespaces).InnerText);
returnxml.Append("</Neighbor>");
}
}
returnxml.Append("</NeighborList>");
List<String> concepts = new List<String>();
foreach (XmlNode keyword in RDF.SelectNodes("rdf:RDF/rdf:Description/rdf:type", namespaces))
{
// see if this is a keyword
XmlNode resource = keyword.SelectSingleNode("@rdf:resource", namespaces);
if (resource.Value == "http://www.w3.org/2004/02/skos/core#Concept")
{
concepts.Add(keyword.ParentNode.SelectSingleNode("rdfs:label", namespaces).InnerText);
}
}
returnxml.Append("<KeywordList TotalKeywordCount=\"" + concepts.Count + "\">");
foreach (String concept in concepts)
{
returnxml.Append("<Keyword>");
returnxml.Append(concept);
returnxml.Append("</Keyword>");
}
returnxml.Append("</KeywordList>");
returnxml.Append("</PassiveNetworks>");
}
returnxml.Append("</Person>");
count++;
}
string complete = "false";
if (RDF.SelectSingleNode("rdf:RDF/rdf:Description/prns:numberOfConnections", namespaces) != null && count.ToString() == RDF.SelectSingleNode("rdf:RDF/rdf:Description/prns:numberOfConnections", namespaces).InnerText)
complete = "true";
topnode = "<?xml version=\"1.0\"?><PersonList Complete=\"" + complete + "\" ThisCount=\"" + count.ToString() + "\" TotalCount=\"" +
(RDF.SelectSingleNode("rdf:RDF/rdf:Description/prns:numberOfConnections", namespaces) == null ? "0" :
RDF.SelectSingleNode("rdf:RDF/rdf:Description/prns:numberOfConnections", namespaces).InnerText) + "\" QueryID=\"" +
queryid + "\" xmlns=\"http://connects.profiles.schema/profiles/personlist\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"" +
" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\">";
returnxml.Append("</PersonList>");
return (topnode + returnxml.ToString()).Replace("&", "&");
}
public Connects.Profiles.Service.DataContracts.PersonList ProfileSearch(Connects.Profiles.Service.DataContracts.Profiles qd, bool isSecure)
{
Connects.Profiles.Service.DataContracts.PersonList pl = null;
string req = string.Empty;
string responseXML = string.Empty;
try
{
DataIO ps = new DataIO();
XmlDocument searchrequest = new XmlDocument();
Utility.Namespace namespacemgr = new Connects.Profiles.Utility.Namespace();
Connects.Profiles.Service.DataContracts.Profiles p = new Connects.Profiles.Service.DataContracts.Profiles();
req = Connects.Profiles.Utility.XmlUtilities.SerializeToString(qd);
DebugLogging.Log("+++++++++ REQUEST=" + req);
Type type = typeof(Connects.Profiles.Service.DataContracts.PersonList);
searchrequest.LoadXml(this.ConvertToRDFRequest(req, qd.Version.ToString()));
if (qd.QueryDefinition.PersonID != null && qd.Version != 2)
{
qd.QueryDefinition.PersonID = ps.GetPersonID(qd.QueryDefinition.PersonID).ToString();
}
if (qd.QueryDefinition.PersonID != null)
{
responseXML = ps.Search(qd.QueryDefinition.PersonID, isSecure).OuterXml;
}
else
{
responseXML = ps.Search(searchrequest, isSecure).OuterXml;
}
string queryid = string.Empty;
queryid = qd.QueryDefinition.QueryID;
if (responseXML == string.Empty)
{
if (queryid == null)
queryid = Guid.NewGuid().ToString();
responseXML = "<PersonList Complete=\"true\" ThisCount=\"0\" TotalCount=\"0\" QueryID=\"" + queryid + "\" xmlns=\"http://connects.profiles.schema/profiles/personlist\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\" />";
}
else
{
string version = string.Empty;
bool individual = false;
version = qd.Version.ToString();
if (qd.QueryDefinition.PersonID != null || qd.QueryDefinition.InternalIDList != null)
individual = true;
responseXML = ps.ConvertV2ToBetaSearch(responseXML, queryid, version, individual);
}
DebugLogging.Log("+++++++++ DONE WITH Convert V2 to Beta Search");
pl = Connects.Profiles.Utility.XmlUtilities.DeserializeObject(responseXML, type) as Connects.Profiles.Service.DataContracts.PersonList;
DebugLogging.Log("+++++++++ Returned + a total count of = " + pl.TotalCount);
}
catch (Exception ex)
{
DebugLogging.Log(req + " " + responseXML);
DebugLogging.Log("ERROR==> " + ex.Message + " STACK:" + ex.StackTrace + " SOURCE:" + ex.Source);
}
return pl;
}
public Connects.Profiles.Service.DataContracts.PersonList ProfileSearch(Connects.Profiles.Service.DataContracts.Profiles qd, bool isSecure)
{
Connects.Profiles.Service.DataContracts.PersonList pl = null;
try
{
DataIO ps = new DataIO();
XmlDocument searchrequest = new XmlDocument();
Utility.Namespace namespacemgr = new Connects.Profiles.Utility.Namespace();
XmlNamespaceManager namespaces;
string responseXML;
Connects.Profiles.Service.DataContracts.Profiles p = new Connects.Profiles.Service.DataContracts.Profiles();
string req = Connects.Profiles.Utility.XmlUtilities.SerializeToString(qd);
Type type = typeof(Connects.Profiles.Service.DataContracts.PersonList);
searchrequest.LoadXml(this.ConvertToRDFRequest(req));
namespaces = namespacemgr.LoadNamespaces(searchrequest);
if (qd.QueryDefinition.PersonID!=null)
{
responseXML = ps.Search(qd.QueryDefinition.PersonID).OuterXml;
}
else
{
responseXML = ps.Search(searchrequest,isSecure).OuterXml;
}
string queryid = string.Empty;
string version = string.Empty;
bool individual = false;
queryid = qd.QueryDefinition.QueryID;
version = qd.Version.ToString();
if (qd.QueryDefinition.PersonID != null)
individual = true;
responseXML = ps.ConvertV2ToBetaSearch(responseXML, queryid, version, individual);
pl = Connects.Profiles.Utility.XmlUtilities.DeserializeObject(responseXML, type) as Connects.Profiles.Service.DataContracts.PersonList;
}
catch (Exception ex)
{
DebugLogging.Log("ERROR==> " + ex.Message + " STACK:" + ex.StackTrace + " SOURCE:" + ex.Source);
}
return pl;
}
