public GPURadixSort(
ComputeCommandQueue commandQue,
ComputeContext context,
ComputeDevice device
)
{
gpuConstants = new GPUConstants();
gpuConstants.L = radix_BitsL;
gpuConstants.numGroupsPerBlock = NumGroupsPerBlock;
gpuConstants.R = R;
gpuConstants.numThreadsPerGroup = numThreadsPerBlock / NumGroupsPerBlock;
gpuConstants.numThreadsPerBlock = numThreadsPerBlock;
gpuConstants.numBlocks = numBlocks;
gpuConstants.numRadices = num_Radices;
gpuConstants.numRadicesPerBlock = num_Radices / numBlocks;
gpuConstants.bitMask = BIT_MASK_START;
counters.Initialize();
ComputeErrorCode error;
cxGPUContext = context.Handle;
cqCommandQueue = commandQue.Handle;
_device = device.Handle;
//Create a command queue, where all of the commands for execution will be added
/*cqCommandQueue = CL10.CreateCommandQueue(cxGPUContext, _device, (CommandQueueProperties)0, out error);
* CheckErr(error, "CL10.CreateCommandQueue");*/
string programSource = System.IO.File.ReadAllText(programPath);
IntPtr[] progSize = new IntPtr[] { (IntPtr)programSource.Length };
string flags = "-cl-fast-relaxed-math";
ComputeProgram prog = new ComputeProgram(context, programSource);
prog.Build(new List <ComputeDevice>()
{
device
}, flags, null, IntPtr.Zero);
if (prog.GetBuildStatus(device) != ComputeProgramBuildStatus.Success)
{
Debug.WriteLine(prog.GetBuildLog(device));
throw new ArgumentException("UNABLE to build programm");
}
// ComputeProgram clProgramRadix = CL10.CreateProgramWithSource(cxGPUContext, 1, new[] { programSource },progSize,
// out error);
CLProgramHandle clProgramRadix = prog.Handle;
ckSetupAndCount = CL10.CreateKernel(clProgramRadix, "SetupAndCount", out error);
CheckErr(error, "CL10.CreateKernel");
ckSumIt = CL10.CreateKernel(clProgramRadix, "SumIt", out error);
CheckErr(error, "CL10.CreateKernel");
ckReorderingKeysOnly = CL10.CreateKernel(clProgramRadix, "ReorderingKeysOnly", out error);
CheckErr(error, "CL10.CreateKernel");
ckReorderingKeyValue = CL10.CreateKernel(clProgramRadix, "ReorderingKeyValue", out error);
CheckErr(error, "CL10.CreateKernel");
}
private void OnProgramBuilt(ComputeProgram program, ComputeDevice device)
{
var status = program.GetBuildStatus(device);
if (status == ComputeProgramBuildStatus.Error)
{
var log = program.GetBuildLog(device);
Console.WriteLine(log);
}
}
static void Main(string[] args)
{
//Test2();
Test1();
ComputePlatform plat = ComputePlatform.Platforms[0];
Console.WriteLine("Plat:" + plat.Name);
ComputeContext context = new ComputeContext(ComputeDeviceTypes.Gpu, new ComputeContextPropertyList(plat), null, IntPtr.Zero);
ComputeCommandQueue queue = new ComputeCommandQueue(context, context.Devices[0], ComputeCommandQueueFlags.None);
StreamReader rs = new StreamReader("Foom/CL/testProg.txt");
string clSrc = rs.ReadToEnd();
rs.Close();
ComputeProgram prog = new ComputeProgram(context, clSrc);
prog.Build(null, null, null, IntPtr.Zero);
Console.WriteLine("BS:" + prog.GetBuildStatus(context.Devices[0]).ToString());
Console.WriteLine("Info:" + prog.GetBuildLog(context.Devices[0]));
ComputeKernel kern = prog.CreateKernel("vector_add");
int[] data = new int[1024];
for (int i = 0; i < 1024; i++)
{
data[i] = 100;
}
ComputeBuffer <int> b1 = new ComputeBuffer <int>(context, ComputeMemoryFlags.CopyHostPointer, data);
ComputeBuffer <int> b2 = new ComputeBuffer <int>(context, ComputeMemoryFlags.WriteOnly, 1024);
// queue.WriteToBuffer<int>(data, b1, true, null);
kern.SetMemoryArgument(0, b1);
kern.SetMemoryArgument(1, b2);
long[] wo = new long[1];
wo[0] = 0;
long[] ws = new long[1];
ws[0] = 1024;
long[] tc = new long[1];
tc[0] = 16;
queue.Execute(kern, wo, ws, tc, null);
int c = Environment.TickCount;
queue.Finish();
c = Environment.TickCount - c;
queue.ReadFromBuffer <int>(b2, ref data, true, null);
for (int i = 0; i < 10; i++)
{
Console.WriteLine("C:" + (int)data[i]);
}
Console.WriteLine("Done:" + c);
while (true)
{
}
}
private void CalculateConvolution(ComputeContext computeContext)
{
Stopwatch stopwatch = new Stopwatch();
stopwatch.Start();
float dx;
bool shiftXParse = float.TryParse(textBoxShiftX.Text, NumberStyles.Float, CultureInfo.InvariantCulture.NumberFormat, out dx);
if (!shiftXParse)
{
throw new SyntaxErrorException(", needs to be .");
}
float dy;
bool shiftYParse = float.TryParse(textBoxShiftX.Text, NumberStyles.Float, CultureInfo.InvariantCulture.NumberFormat, out dy);
if (!shiftYParse)
{
throw new SyntaxErrorException(", needs to be .");
}
float dz;
bool shiftZParse = float.TryParse(textBoxShiftX.Text, NumberStyles.Float, CultureInfo.InvariantCulture.NumberFormat, out dz);
if (!shiftZParse)
{
throw new SyntaxErrorException(", needs to be .");
}
int pixelCount = _imageDimensionX * _imageDimensionY * _imageDimensionZ;
Console.WriteLine("Computing...");
Console.WriteLine("Reading kernel...");
String kernelPath = Directory.GetParent(Directory.GetCurrentDirectory()).Parent.Parent.FullName;
String kernelString;
using (var sr = new StreamReader(kernelPath + "\\convolution.cl"))
kernelString = sr.ReadToEnd();
Console.WriteLine("Reading kernel... done");
float[] selectedTransformation = Transformations.GetTransformation((TransformationType)comboBoxTransform.SelectedItem, 1.0f / float.Parse(textBoxPixelSize.Text), 1.0f / float.Parse(textBoxPixelSize.Text), 1.0f / float.Parse(textBoxPixelSize.Text), dx, dy, dz);
//create openCL program
ComputeProgram computeProgram = new ComputeProgram(computeContext, kernelString);
computeProgram.Build(computeContext.Devices, null, null, IntPtr.Zero);
ComputeProgramBuildStatus computeProgramBuildStatus = computeProgram.GetBuildStatus(_selectedComputeDevice);
Console.WriteLine("computeProgramBuildStatus\n\t" + computeProgramBuildStatus);
String buildLog = computeProgram.GetBuildLog(_selectedComputeDevice);
Console.WriteLine("buildLog");
if (buildLog.Equals("\n"))
{
Console.WriteLine("\tbuildLog is empty...");
}
else
{
Console.WriteLine("\t" + buildLog);
}
float[] fluorophores = CsvData.ReadFluorophores(_sourceFilename);
/////////////////////////////////////////////
// Create a Command Queue & Event List
/////////////////////////////////////////////
ComputeCommandQueue computeCommandQueue = new ComputeCommandQueue(computeContext, _selectedComputeDevice, ComputeCommandQueueFlags.None);
////////////////////////////////////////////////////////////////
// Create Buffers Transform
////////////////////////////////////////////////////////////////
ComputeBuffer <float> fluorophoresCoords = new ComputeBuffer <float>(computeContext, ComputeMemoryFlags.ReadWrite, fluorophores.LongLength);
ComputeBuffer <float> transformationMatrix = new ComputeBuffer <float>(computeContext, ComputeMemoryFlags.ReadOnly, selectedTransformation.LongLength);
/////////////////////////////////////////////
// Create the transformFluorophoresKernel
///////////////////////////////////////////////////////////
ComputeKernel transformFluorophoresKernel = computeProgram.CreateKernel("transform_fluorophores");
/////////////////////////////////////////////
// Set the transformFluorophoresKernel arguments
/////////////////////////////////////////////
transformFluorophoresKernel.SetMemoryArgument(0, fluorophoresCoords);
transformFluorophoresKernel.SetMemoryArgument(1, transformationMatrix);
/////////////////////////////////////////////
// Configure the work-item structure
/////////////////////////////////////////////
long[] globalWorkOffsetTransformFluorophoresKernel = null;
long[] globalWorkSizeTransformFluorophoresKernel = new long[] { fluorophores.Length / 4 };
long[] localWorkSizeTransformFluorophoresKernel = null;
////////////////////////////////////////////////////////
// Enqueue the transformFluorophoresKernel for execution
////////////////////////////////////////////////////////
computeCommandQueue.WriteToBuffer(fluorophores, fluorophoresCoords, true, null);
computeCommandQueue.WriteToBuffer(selectedTransformation, transformationMatrix, true, null);
computeCommandQueue.Execute(transformFluorophoresKernel, globalWorkOffsetTransformFluorophoresKernel, globalWorkSizeTransformFluorophoresKernel, localWorkSizeTransformFluorophoresKernel, null);
// computeCommandQueue.ExecuteTask(transformFluorophoresKernel, transformFluorophoresEvents);
float[] transformedFluorophores = new float[fluorophores.Length];
computeCommandQueue.ReadFromBuffer(fluorophoresCoords, ref transformedFluorophores, true, null);
computeCommandQueue.Finish();
//TODO remove, only for testing
// for (int i = 0; i < transformedFluorophores.Length; i++)
// {
// Console.WriteLine(transformedFluorophores[i]);
// }
// /TODO remove, only for testing
stopwatch.Stop();
Console.WriteLine("Transform fluophores duration:\n\t" + stopwatch.Elapsed);
stopwatch.Reset();
stopwatch.Start();
// fluorophoresCoords are now transformed (done in place)
////////////////////////////////////////////////////////////////
// Create Buffers Convolve Fluorophores
////////////////////////////////////////////////////////////////
const int convolve_kernel_lwgs = 16;
int totalBuffer = (int)Math.Ceiling(pixelCount / (float)convolve_kernel_lwgs) * convolve_kernel_lwgs;
ComputeBuffer <float> resultImage = new ComputeBuffer <float>(computeContext, ComputeMemoryFlags.WriteOnly, totalBuffer);
/////////////////////////////////////////////
// Create the transformFluorophoresKernel
/////////////////////////////////////////////
ComputeKernel convolveFluorophoresKernel = computeProgram.CreateKernel("convolve_fluorophores");
/////////////////////////////////////////////
// Set the convolveFluorophoresKernel arguments
/////////////////////////////////////////////
convolveFluorophoresKernel.SetMemoryArgument(0, resultImage);
convolveFluorophoresKernel.SetValueArgument(1, _imageDimensionX);
convolveFluorophoresKernel.SetValueArgument(2, _imageDimensionY);
convolveFluorophoresKernel.SetMemoryArgument(3, fluorophoresCoords);
convolveFluorophoresKernel.SetLocalArgument(4, convolve_kernel_lwgs);
convolveFluorophoresKernel.SetValueArgument(5, fluorophores.Length / 4);
/////////////////////////////////////////////
// Configure the work-item structure
/////////////////////////////////////////////
long[] globalWorkOffsetTransformConvolveFluorophoresKernel = null;
long[] globalWorkSizeTransformConvolveFluorophoresKernel = new long[] { pixelCount };
long[] localWorkSizeTransformConvolveFluorophoresKernel = new long[] { convolve_kernel_lwgs };
////////////////////////////////////////////////////////
// Enqueue the convolveFluorophoresKernel for execution
////////////////////////////////////////////////////////
computeCommandQueue.Execute(convolveFluorophoresKernel, globalWorkOffsetTransformConvolveFluorophoresKernel, globalWorkSizeTransformConvolveFluorophoresKernel, localWorkSizeTransformConvolveFluorophoresKernel, null);
float[] resultImageData = new float[totalBuffer];
computeCommandQueue.ReadFromBuffer(resultImage, ref resultImageData, true, null);
computeCommandQueue.Finish();
for (int i = 0; i < pixelCount; i++)
{
Console.WriteLine(resultImageData[i]);
}
Console.WriteLine("Writing data to file...");
// CsvData.WriteToDisk("..\\..\\..\\output.csv", resultImageData);
TiffData.WriteToDisk(resultImageData, _saveFilename, _imageDimensionX, _imageDimensionY);
Bitmap bitmap = new Bitmap(_imageDimensionX, _imageDimensionY);
float max = resultImageData.Max();
float scale = 255 / (float)max;
// for (int r = 0; r < _imageDimensionY; r++)
// {
// for (int c = 0; c < _imageDimensionX; c++)
// {
// float value = resultImageData[c*(r + 1)];
// Color newColor = Color.FromArgb((int)(value * scale), (int)(value * scale), (int)(value * scale));
// bitmap.SetPixel(c,r, newColor);
// }
// }
ushort[] ushortdata = new ushort[resultImageData.Length];
for (int i = 0; i < resultImageData.Length; i++)
{
ushortdata[i] = (ushort)resultImageData[i];
}
uint[] convertGray16ToRgb = ConvertGray16ToRGB(ushortdata, 16);
byte[] bytes = new byte[convertGray16ToRgb.Length * 4];
//
// int[] resultImageData2 = new int[resultImageData.Length];
//
for (int index = 0; index < convertGray16ToRgb.Length; index++)
{
// resultImageData2[index] = (int)(scale*resultImageData[index]);
byte[] bytes1 = BitConverter.GetBytes(convertGray16ToRgb[index]);
bytes[index] = bytes1[0];
bytes[4 * index + 1] = bytes1[1];
bytes[4 * index + 2] = bytes1[2];
bytes[4 * index + 3] = bytes1[3];
}
//
// for (int r = 0; r < _imageDimensionY; r++)
// {
// for (int c = 0; c < _imageDimensionX; c++)
// {
// float value = resultImageData2[c*(r + 1)];
// Color newColor = Color.FromArgb((int)(value), (int)(value), (int)(value));
// bitmap.SetPixel(c,r, newColor);
// }
// }
// bitmap.Save("c:\\temp.bmp");
using (MemoryStream ms = new MemoryStream(bytes))
{
Image image = Bitmap.FromStream(ms);
image.Save("c:\\temp.bmp");
}
Console.WriteLine("Writing data to file... done");
stopwatch.Stop();
Console.WriteLine("Convolve fluophores duration:\n\t" + stopwatch.Elapsed);
Console.WriteLine("Computing... done");
}
public static void CompileKernel()
{
Console.WriteLine("OpenCL: Compiling kernel code...");
platform = ComputePlatform.Platforms[0]; // todo find amd gpus..
IList <ComputeDevice> devices;
devices = new List <ComputeDevice>();
object[] availableDevices = new object[platform.Devices.Count];
for (int i = 0; i < availableDevices.Length; i++)
{
availableDevices[i] = platform.Devices[i].Name;
}
properties = new ComputeContextPropertyList(platform);
devices.Add(platform.Devices[0]);
context = new ComputeContext(devices, properties, null, IntPtr.Zero);
/* if binary file was saved load it */
if (File.Exists("./KernelBinary.bin") && !Params.FORCE_KERNEL_RECOMPILE)
{
try
{
byte[] binaryIn = File.ReadAllBytes("KernelBinary.bin");
List <byte[]> binaries = new List <byte[]>();
binaries.Add(binaryIn);
program = new ComputeProgram(context, binaries, devices);
ComputeProgramBuildStatus error = program.GetBuildStatus(context.Devices[0]);
try
{
program.Build(null, null, null, IntPtr.Zero);
}
catch
{
Console.WriteLine(program.GetBuildLog(devices[0]));
throw;
}
}
catch
{
Console.WriteLine("Could not read binary opencl kernel ");
}
}
else
{
// Create and build the opencl program.
StreamReader streamReader = new StreamReader("../../NeuralNetwork.cl");
string openClCode = streamReader.ReadToEnd();
streamReader.Close();
program = new ComputeProgram(context, openClCode);
ComputeProgramBuildStatus error = program.GetBuildStatus(context.Devices[0]);
try
{
program.Build(null, null, null, IntPtr.Zero);
}
catch
{
Console.WriteLine(program.GetBuildLog(devices[0]));
throw;
}
try
{
byte[] binaryOut = program.Binaries[0];
BinaryWriter Writer = null;
// Create a new stream to write to the file
Writer = new BinaryWriter(File.OpenWrite("./KernelBinary.bin"));
// Writer raw data
Writer.Write(binaryOut);
Writer.Flush();
Writer.Close();
}
catch
{
Console.WriteLine("Could not write binary opencl kernel to file ");
}
}
// Create the kernel function and set its arguments.
kernel = program.CreateKernel("NN");
// Create the command queue. This is used to control kernel execution and manage read/write/copy operations.
commandQueue1 = new ComputeCommandQueue(context, context.Devices[0], ComputeCommandQueueFlags.None);
commandQueue2 = new ComputeCommandQueue(context, context.Devices[0], ComputeCommandQueueFlags.None);
}
