public void WriteEndOfFile()
{
_originalCache.WriteScanIds(_outputStreamScans);
ChromatogramCache.WriteStructs(_outputStream,
_outputStreamScans,
_outputStreamPeaks,
_outputStreamScores,
_originalCache.CachedFiles,
_chromGroupHeaderInfos,
_transitions,
_scoreTypes,
_scoreCount,
_peakCount,
_originalCache);
}