protected ChromInfoData(MeasuredResults measuredResults, int replicateIndex, ChromFileInfo chromFileInfo, ChromInfo chromInfo)
{
MeasuredResults = measuredResults;
ReplicateIndex = replicateIndex;
ChromFileInfo = chromFileInfo;
ChromInfo = chromInfo;
}
static int GetOptStep(ChromInfo chromInfo)
{
var transitionChromInfo = chromInfo as TransitionChromInfo;
if (transitionChromInfo != null)
{
return(transitionChromInfo.OptimizationStep);
}
var transitionGroupChromInfo = chromInfo as TransitionGroupChromInfo;
if (transitionGroupChromInfo != null)
{
return(transitionGroupChromInfo.OptimizationStep);
}
return(0);
}
static Annotations GetAnnotations(ChromInfo chromInfo)
{
var transitionGroupChromInfo = chromInfo as TransitionGroupChromInfo;
if (transitionGroupChromInfo != null)
{
return(transitionGroupChromInfo.Annotations);
}
var transitionChromInfo = chromInfo as TransitionChromInfo;
if (transitionChromInfo != null)
{
return(transitionChromInfo.Annotations);
}
return(null);
}
private bool IsMatch(ChromInfo chromInfo, PeptideDocNode nodePep)
{
var key = new PeakTransitionGroupIdKey(nodePep.Id.GlobalIndex, chromInfo.FileId.GlobalIndex);
if (!_featureDictionary.ContainsKey(key))
{
return(false);
}
var listFeatures = _featureDictionary[key];
foreach (var features in listFeatures)
{
if (IsUnknownScore(features, _selectedCalculator))
{
return(true);
}
}
return(false);
}
private bool IsMatch(ChromInfo chromInfo, PeptideDocNode nodePep)
{
var key = new KeyValuePair<int, int>(nodePep.Id.GlobalIndex, chromInfo.FileId.GlobalIndex);
if (!_featureDictionary.ContainsKey(key))
return false;
var listFeatures = _featureDictionary[key];
foreach (var features in listFeatures)
{
if (IsUnknownScore(features, _selectedCalculator))
return true;
}
return false;
}
static Annotations GetAnnotations(ChromInfo chromInfo)
{
var transitionGroupChromInfo = chromInfo as TransitionGroupChromInfo;
if (transitionGroupChromInfo != null)
{
return transitionGroupChromInfo.Annotations;
}
var transitionChromInfo = chromInfo as TransitionChromInfo;
if (transitionChromInfo != null)
{
return transitionChromInfo.Annotations;
}
return null;
}
public override void SetAnnotation(AnnotationDef annotationDef, object value)
{
ChangeChromInfo(EditDescription.SetAnnotation(annotationDef, value),
ChromInfo.ChangeAnnotations(ChromInfo.Annotations.ChangeAnnotation(annotationDef, value)));
}