public void Run(ILogger logger, ICheckpointRunner checkpointRunner, IWorkManager workManager, IFileLocation runtimeExecutable)
{
CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, runtimeExecutable, true, CanvasCoverageMode.GCContentWeighted, 100, CommonOptions.CustomParams);
var callset = GetCallset();
runner.CallSample(callset);
}
public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
{
CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.GCContentWeighted, 300, CommonOptions.CustomParams);
var callset = GetCallset(logger);
runner.CallSample(callset);
}
public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
{
CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, false, CanvasCoverageMode.TruncatedDynamicRange, 100, CommonOptions.CustomParams);
var callset = GetCallset();
logger.Info($"Normal Vcf path: {callset.NormalVcfPath}");
runner.CallSample(callset);
}
