private void CheckOutput(Model resultModel, BenchmarkPhase phase, int?iteration = null)
{
var description = phase switch
{
BenchmarkPhase.Initial => "initial result",
BenchmarkPhase.Update => $"model after update {iteration}",
_ => throw new ArgumentOutOfRangeException(nameof(phase))
};
var jobCollection = resultModel.RootElements.OfType <IJobCollection>().FirstOrDefault();
if (jobCollection == null)
{
throw new ArgumentException("No job collection found in " + description);
}
AssertEmpty(jobCollection.Jobs.Select(job => job.ProtocolStepName).Distinct().Where(name => !AllowedStepNames.Any(name.StartsWith)), "protocol step names", description);
AssertEmpty(from liquidTransfer in jobCollection.Jobs.OfType <ILiquidTransferJob>()
from tipCavity in liquidTransfer.Tips
where tipCavity.TargetCavityIndex < 0 || tipCavity.TargetCavityIndex >= 96
select tipCavity.TargetCavityIndex.ToString(), "target cavity indices", description);
AssertEmpty(from liquidTransfer in jobCollection.Jobs.OfType <ILiquidTransferJob>()
from tipCavity in liquidTransfer.Tips
group tipCavity by(liquidTransfer.Target?.Name, tipCavity.TargetCavityIndex, liquidTransfer.ProtocolStepName) into transferGroup
where transferGroup.Count() > 1
select $"{transferGroup.Key.Name} into cavity {transferGroup.Key.TargetCavityIndex} for {transferGroup.Key.ProtocolStepName} ({transferGroup.Count()} hits)",
"cavities used multiple times",
description);
Report(phase, iteration, resultModel.Descendants().Count());
}
static void Report(BenchmarkPhase phase, int?iteration = null, string result = null)
{
GC.Collect();
Console.WriteLine($"{Tool};{Query};{ChangeSet};{RunIndex};{iteration ?? 0};{phase};Time;{stopwatch.Elapsed.Ticks * 100}");
Console.WriteLine($"{Tool};{Query};{ChangeSet};{RunIndex};{iteration ?? 0};{phase};Memory;{Environment.WorkingSet}");
if (result != null)
{
Console.WriteLine($"{Tool};{Query};{ChangeSet};{RunIndex};{iteration ?? 0};{phase};Elements;{result}");
}
}
private void CheckOutput(Model resultModel, BenchmarkPhase phase, int?iteration = null)
{
var description = phase switch
{
BenchmarkPhase.Initial => "initial result",
BenchmarkPhase.Update => $"model after update {iteration}",
_ => throw new ArgumentOutOfRangeException(nameof(phase))
};
var jobCollection = resultModel.RootElements.OfType <IJobCollection>().FirstOrDefault();
if (jobCollection == null)
{
throw new ArgumentException("No job collection found in " + description);
}
AssertEmpty(jobCollection.Jobs.Select(job => job.ProtocolStepName).Distinct().Where(name => !AllowedStepNames.Any(name.StartsWith)), "protocol step names", description);
AssertEmpty(from liquidTransfer in jobCollection.Jobs.OfType <ILiquidTransferJob>()
from tipCavity in liquidTransfer.Tips
where tipCavity.TargetCavityIndex < 0 || tipCavity.TargetCavityIndex >= 96
select tipCavity.TargetCavityIndex.ToString(), "target cavity indices", description);
AssertEmpty(from liquidTransfer in jobCollection.Jobs.OfType <ILiquidTransferJob>()
from tipCavity in liquidTransfer.Tips
group tipCavity by(liquidTransfer.Target?.Name, tipCavity.TargetCavityIndex, liquidTransfer.ProtocolStepName) into transferGroup
where transferGroup.Count() > 1
select $"{transferGroup.Key.Name} into cavity {transferGroup.Key.TargetCavityIndex} for {transferGroup.Key.ProtocolStepName} ({transferGroup.Count()} hits)",
"cavities used multiple times",
description);
var failedPlatesIncubate = from incubate in jobCollection.Jobs.OfType <IIncubateJob>()
where incubate.State == JobStatus.Failed
select incubate.Microplate;
var failedPlatesWash = from wash in jobCollection.Jobs.OfType <IWashJob>()
where wash.State == JobStatus.Failed
select wash.Microplate;
var failedPlates = new HashSet <ILabware>(failedPlatesIncubate.Concat(failedPlatesWash));
var liquidTransfersPerWell = from liquidTransfer in jobCollection.Jobs.OfType <ILiquidTransferJob>()
from tipCavity in liquidTransfer.Tips
group tipCavity by(tipCavity.TargetCavityIndex, liquidTransfer.Target) into wellGroup
where wellGroup.All(tipTransfer => tipTransfer.Status != JobStatus.Failed) && !failedPlates.Contains(wellGroup.Key.Target)
select wellGroup;
Report(phase, iteration, resultModel.Descendants().Count(), liquidTransfersPerWell.Count());
}
private void Report(BenchmarkPhase phase, int?iteration = null)
{
GC.Collect();
Console.WriteLine($"{Tool};{Scenario};{Model};{RunIndex};{iteration ?? 0};{phase};Time;{_stopwatch.Elapsed.Ticks * 100}");
Console.WriteLine($"{Tool};{Scenario};{Model};{RunIndex};{iteration ?? 0};{phase};Memory;{Environment.WorkingSet}");
}
private void Report(BenchmarkPhase phase, int?iteration, int elements, int successfulWells)
{
Console.WriteLine($"{Tool};{Scenario};{Model};{RunIndex};{iteration ?? 0};{phase};Elements;{elements}");
Console.WriteLine($"{Tool};{Scenario};{Model};{RunIndex};{iteration ?? 0};{phase};ActiveSamples;{successfulWells}");
}
private void Report(BenchmarkPhase phase, int?iteration, int elements)
{
Console.WriteLine($"{Tool};{Scenario};{Model};{RunIndex};{iteration ?? 0};{phase};Elements;{elements}");
}