/// <summary>
/// Generate the atom container with this permutation of the atoms.
/// </summary>
/// <param name="permutation">the permutation to use</param>
/// <returns></returns>
public override IAtomContainer ContainerFromPermutation(int[] permutation)
{
IAtomContainer permutedContainer = (IAtomContainer)AtomContainer.Clone();
IAtom[] atoms = new IAtom[AtomContainer.Atoms.Count];
for (int i = 0; i < AtomContainer.Atoms.Count; i++)
{
atoms[permutation[i]] = permutedContainer.Atoms[i];
}
permutedContainer.SetAtoms(atoms);
return(permutedContainer);
}
