Exemple #1
0
        public void SuppIntervalCnv()
        {
            var annotatedVariant = DataUtilities.GetSuppIntervalVariant(Resources.MiniSuppAnnot("chr1_713035_713060.nsa"),
                "chr1	713045	.	T	<CN1>	.	LowGQX;HighDPFRatio	END=718045;SVTYPE=CNV;BLOCKAVG_min30p3a	GT:GQX:DP:DPF	.:.:0:1");
            Assert.NotNull(annotatedVariant);

            AssertUtilities.CheckIntervalCount(28, annotatedVariant);
            AssertUtilities.CheckJsonContains("variantType\":\"copy_number_variation\"", annotatedVariant);
        }