public IEnumerable <object> Get()
{
logData.Info("Get Assay Function is called");
// getting back the assaytypes from the database table( AssayTypes)
using (var repo = new AssayRepository())
{
try
{
List <DisplayClass> objectAssay = new List <DisplayClass>();
var assaynamesobj = repo.GetAssay();
foreach (var assaytype in assaynamesobj)
{
DisplayClass ds = new DisplayClass();
ds.Id = assaytype.ID;
ds.TypeId = assaytype.TypeId;
ds.AssayName = assaytype.AssayName;
objectAssay.Add(ds);
}
logData.Info("Get Assay Function is finished");
return(objectAssay);
}
catch (SqlException odbcEx)
{
Console.WriteLine(odbcEx.Message);
logData.Error(odbcEx.Message);
return(null);
}
}
}
public string Get()
{
log.Info("getAssay method is called");
IEnumerable <AssayType> container = null;
var toReturn = new List <AssayCount>();
var repo = new AssayRepository();
var curveRepo = new CurveFilesRepository();
container = repo.GetAssay();
foreach (var item in container)
{
toReturn.Add(new AssayCount
{
assay = item,
fileCount = curveRepo.GetCountOfCurve(item.TypeId)
});
}
log.Info("getAssay method is finished");
return(JsonConvert.SerializeObject(toReturn));
}
// POST: api/ExtractAssayName
public IEnumerable <string> Post()
{
/* lock (ControllerSync)
* {
*/
List <string> assayNames = new List <string>();
for (var i = 0; i < HttpContext.Current.Request.Files.Count; i++)
{
int flag = 0;
logData.Info("Get all files from the staged area to extract assayname");
HttpPostedFile file = HttpContext.Current.Request.Files.Get(i);
string filename = file.FileName;
var tempPathToStore = Path.GetTempPath();
tempPathToStore += "assaynames";
System.IO.Directory.CreateDirectory(tempPathToStore);
//save the file in temp folder
file.SaveAs(tempPathToStore + file.FileName);
//getting the path of stored file
var tempStoredPath = tempPathToStore + file.FileName;
var tempfilename = filename.Replace(".pdf", ".txt");
string pathToText = System.IO.Path.Combine(tempPathToStore, tempfilename);
//Convert PDF file to Text file
SautinSoft.PdfFocus f = new SautinSoft.PdfFocus();
f.OpenPdf(tempStoredPath);
if (f.PageCount > 0)
{
int count = 0;
try
{
string line;
//getting assaynames from database
var repo = new AssayRepository();
List <string> assaylist1 = new List <string>();
//string[] assayFromDb;
var assaynamesobj = repo.GetAssay();
foreach (var assaytype in assaynamesobj)
{
string assayname = assaytype.AssayShortName;
assaylist1.Add(assayname);
}
string[] assaylistFromDB = assaylist1.ToArray();
foreach (var ind in assaylistFromDB)
{
Debug.WriteLine(ind);
}
//string[] assaylist1 = { "AC2", "AC2 250 (1)", "AdV/hMPV/RV", "Babesia", "C. diff", "CT", "CT 250", "DENV", "dHBV", "dHCV", "dHIV", "DNA60", "Flu A/B/RSV", "GBS", "GC", "GC 250 (6)", "GT HPV", "HEV", "HPV", "HPV 250 (14)", "HSV 1&2", "LDT RT TMA-1", "LDT RT TMA-2", "LDT RT TMA-3", "LDT TMA-1", "LDT TMA-2", "LDT TMA-3", "LDT1", "M gen", "MRSA", "OADNA55", "OADNA58", "OADNA62", "OADNA65", "Paraflu", "Parvo/HAV", "PSA 100", "QCDNAIC", "QCFluPPR", "QCRNAIC", "qHBV", "qHCV", "qHIV-1", "RNA60", "RNA60-10uL", "TRICH", "TRICH 250 (10)", "Ultrio Elite", "WNV", "ZIKV", "ZIKV (51)" };
string[] assaylist2 = { "AC2 100 (21)", "AC2 250 (1)", "AdV/hMPV/RV (102)", "Babesia (50)", "C. diff (108)", "CT 100 (22)", "CT 250 (5)", "DENV (36)", "dHBV (97)", "dHCV (98)", "dHIV (99)", "DNA60 (1507)", "Flu A/B/RSV (101)", "GBS (106)", "GC 100 (23)", "GC 250 (6)", "GT HPV (20)", "HEV (39)", "HPV 100 (24)", "HPV 250 (14)", "HSV 1&2 (40)", "LDT RT TMA-1 (90)", "LDT RT TMA-2 (91)", "LDT RT TMA-3 (92)", "LDT TMA-1 (95)", "LDT TMA-2 (88)", "LDT TMA-3 (89)", "LDT1 (1001)", "M gen (43)", "MRSA (107)", "OADNA55 (1505)", "OADNA58 (1506)", "OADNA62 (1508)", "OADNA65 (1509)", "Paraflu (103)", "Parvo/HAV (29)", "PSA 100 (31)", "QCDNAIC (1501)", "QCFluPPR (1503)", "QCRNAIC (1502)", "qHBV (34)", "qHCV (32)", "qHIV-1 (28)", "RNA60 (1510)", "RNA60-10uL (1512)", "TRICH 100 (9)", "TRICH 250 (10)", "Ultrio Elite (25)", "WNV (4)", "ZIKV (52)", "ZIKV (51)" };
int result = f.ToText(pathToText);
if (result == 0)
{
var lineCount = File.ReadLines(pathToText).Count();
Debug.WriteLine(lineCount);
FileStream inFile = new FileStream(pathToText, FileMode.Open, FileAccess.Read, FileShare.ReadWrite);
using (StreamReader sr = new StreamReader(inFile))
{
while ((line = sr.ReadLine()) != null)
{
count++;
foreach (string word in assaylist1)
{
if (line.Contains(word))
{
var indexOfAssay = Array.IndexOf(assaylistFromDB, word);
var assayNameExtracted = assaylist2[indexOfAssay];
assayNames.Add(assayNameExtracted);
flag = 1;
break;
}
}
if (flag == 1)
{
break;
}
}
Debug.WriteLine(count);
if (count == lineCount)
{
var assayNameExtracted = "Choose AssayName";
assayNames.Add(assayNameExtracted);
}
}
if (assayNames[i] == "")
{
assayNames.Add("Choose AssayName");
}
}
logData.Info("Returning the assay name");
}
catch (Exception e)
{
logData.Error(e.Message);
}
f.ClosePdf();
}
else
{
assayNames.Add("Choose AssayName");
}
}
return(assayNames);
// }
}
