private static void AddAnnotations(Configuration configuration, SrmSettings settings, AnnotationDef.AnnotationTarget annotationTarget, Type persistentClass)
{
var mapping = configuration.GetClassMapping(persistentClass);
foreach (var annotationDef in settings.DataSettings.AnnotationDefs)
{
if (!annotationDef.AnnotationTargets.Contains(annotationTarget))
{
continue;
}
string columnName = AnnotationDef.GetColumnName(annotationDef.Name);
Type accessorType;
switch (annotationDef.Type)
{
case AnnotationDef.AnnotationType.number:
accessorType = typeof(NumberAnnotationPropertyAccessor);
break;
case AnnotationDef.AnnotationType.true_false:
accessorType = typeof(BoolAnnotationPropertyAccessor);
break;
default:
accessorType = typeof(AnnotationPropertyAccessor);
break;
}
AddColumn(mapping, columnName, accessorType);
}
}
private void CreateBaseView(DocumentGridForm documentGrid)
{
RunUI(() => documentGrid.ChooseView(Resources.SkylineViewContext_GetDocumentGridRowSources_Peptides));
var viewEditor = ShowDialog <ViewEditor>(documentGrid.DataboundGridControl.NavBar.CustomizeView);
var columnsToKeep = new[]
{
PropertyPath.Root.Property("Proteins").LookupAllItems(),
PropertyPath.Root.Property("Proteins").LookupAllItems().Property("Peptides").LookupAllItems()
};
RunUI(() =>
{
foreach (var column in viewEditor.ChooseColumnsTab.ViewSpec.Columns)
{
if (!columnsToKeep.Contains(column.PropertyPath))
{
viewEditor.ChooseColumnsTab.RemoveColumn(column.PropertyPath);
}
}
});
Assert.AreEqual(columnsToKeep.Length, viewEditor.ChooseColumnsTab.ColumnCount);
PropertyPath pathNormalizedArea = PropertyPath.Root.Property("Proteins").LookupAllItems()
.Property("Peptides").LookupAllItems()
.Property("Results").LookupAllItems().Property("Value").Property("Quantification")
.Property("NormalizedArea");
var columnsToAdd = new[]
{
PropertyPath.Root.Property("Replicates").LookupAllItems()
.Property(AnnotationDef.GetColumnName("BioReplicate")),
PropertyPath.Root.Property("Replicates").LookupAllItems()
.Property(AnnotationDef.GetColumnName("ConditionNumber")),
pathNormalizedArea
};
RunUI(() =>
{
foreach (var column in columnsToAdd)
{
viewEditor.ChooseColumnsTab.AddColumn(column);
}
});
RunUI(() =>
{
viewEditor.ViewName = pivotTestViewName;
});
OkDialog(viewEditor, viewEditor.OkDialog);
}
