private void peptideFragmentationToolStripMenuItem_Click(object sender, EventArgs e)
{
PeptideFragmentationForm peptideFragmentationForm = new PeptideFragmentationForm();
peptideFragmentationForm.ShowDialog(this);
if (peptideFragmentationForm.DialogResult == DialogResult.Cancel)
{
return;
}
if (peptideFragmentationForm.MsProductReportXml != null)
{
Map <string, List <Pair <double, int> > > pointAnnotations = new Map <string, List <Pair <double, int> > >();
XmlTextReader reader = new XmlTextReader(new StringReader(peptideFragmentationForm.MsProductReportXml));
string ionSeriesName = "immonium";
string ionSeriesIndex = "";
int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count;
while (reader.Read())
{
switch (reader.NodeType)
{
case XmlNodeType.Element:
if (reader.Name == "mz")
{
string[] ionMzChargeStr = reader.ReadElementContentAsString().Split(",".ToCharArray());
double ionMz = Convert.ToDouble(ionMzChargeStr[0]);
int ionCharge = Convert.ToInt32(ionMzChargeStr[1]);
pointAnnotations[ionSeriesName + ionSeriesIndex].Add(new Pair <double, int>(ionMz, ionCharge));
}
else if (reader.Name[0] == 'i')
{
Int32 test;
if (Int32.TryParse(reader.Name.Substring(1), out test))
{
ionSeriesIndex = " " + reader.Name.Substring(1);
}
}
else if (reader.Name == "name")
{
ionSeriesName = reader.ReadElementContentAsString();
}
break;
}
}
if (CurrentGraphForm.CurrentScan.IsMassSpectrum)
{
CurrentGraphForm.AnnotationSettings.setScanLabels(pointAnnotations);
if (CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount)
{
CurrentGraphForm.updateGraph();
}
}
}
}
private void peptideFragmentationToolStripMenuItem_Click( object sender, EventArgs e )
{
PeptideFragmentationForm peptideFragmentationForm = new PeptideFragmentationForm();
peptideFragmentationForm.ShowDialog( this );
if( peptideFragmentationForm.DialogResult == DialogResult.Cancel )
return;
if( peptideFragmentationForm.MsProductReportXml != null )
{
Map<string, List<Pair<double, int>>> pointAnnotations = new Map<string, List<Pair<double, int>>>();
XmlTextReader reader = new XmlTextReader( new StringReader( peptideFragmentationForm.MsProductReportXml ) );
string ionSeriesName = "immonium";
string ionSeriesIndex = "";
int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count;
while( reader.Read() )
{
switch( reader.NodeType )
{
case XmlNodeType.Element:
if( reader.Name == "mz" )
{
string[] ionMzChargeStr = reader.ReadElementContentAsString().Split( ",".ToCharArray() );
double ionMz = Convert.ToDouble( ionMzChargeStr[0] );
int ionCharge = Convert.ToInt32( ionMzChargeStr[1] );
pointAnnotations[ionSeriesName + ionSeriesIndex].Add( new Pair<double, int>( ionMz, ionCharge ) );
} else if( reader.Name[0] == 'i' )
{
Int32 test;
if( Int32.TryParse( reader.Name.Substring( 1 ), out test ) )
{
ionSeriesIndex = " " + reader.Name.Substring( 1 );
}
} else if( reader.Name == "name" )
{
ionSeriesName = reader.ReadElementContentAsString();
}
break;
}
}
CurrentGraphForm.ScanAnnotationSettings.setScanLabels( pointAnnotations );
if( CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount )
CurrentGraphForm.updateGraph();
}
}
