private void ShowHalfLifeForm(Peptide peptide, string proteinName, string cohort)
{
if (0 != (GetKeyState(0x10) & 0x8000))
{
var halfLifeRowDataForm = new HalfLifeRowDataForm(_form.Workspace)
{
Protein = proteinName,
};
if (peptide != null)
{
halfLifeRowDataForm.Peptide = peptide.ToString();
}
var resultData = HalfLives[cohort].Value;
halfLifeRowDataForm.RowDatas = resultData.RowDatas;
halfLifeRowDataForm.Show(_form.DockPanel, _form.DockState);
return;
}
var halfLifeForm = new HalfLifeForm(_form.Workspace)
{
Peptide = peptide == null ? "" : peptide.Sequence,
ProteinName = proteinName,
Cohort = cohort,
};
halfLifeForm.SetHalfLifeSettings(_form.HalfLifeSettings);
for (int i = 0; i < _form.checkedListBoxTimePoints.Items.Count; i++)
{
halfLifeForm.SetTimePointExcluded((double)_form.checkedListBoxTimePoints.Items[i],
!_form.checkedListBoxTimePoints.GetItemChecked(i));
}
halfLifeForm.Show(_form.DockPanel, _form.DockState);
}
private EventHandler GetClickEventHandler(HalfLifeCalculationType halfLifeCalculationType)
{
return((sender, args) =>
{
var cohortBuilder = new StringBuilder();
if (!string.IsNullOrEmpty(Cohort))
{
cohortBuilder.Append(Cohort);
}
if (!string.IsNullOrEmpty(Sample))
{
if (cohortBuilder.Length > 0)
{
cohortBuilder.Append(" ");
}
cohortBuilder.Append(Sample);
}
var halfLifeForm = new HalfLifeForm(_form.Workspace)
{
Peptide = _displayRow.Peptide == null ? "" : _displayRow.Peptide.Sequence,
ProteinName = _displayRow.ProteinName,
Cohort = cohortBuilder.ToString(),
};
halfLifeForm.SetHalfLifeSettings(_displayRow.GetHalfLifeCalculator().HalfLifeSettings);
halfLifeForm.Show(_form.DockPanel, _form.DockState);
});
}
private void BtnShowGraphOnClick(object sender, EventArgs e)
{
var halfLifeForm = new HalfLifeForm(Workspace)
{
Peptide = Peptide.Sequence,
ProteinName = Peptide.ProteinName,
};
halfLifeForm.Show(DockPanel, DockState);
}
private void dataGridView1_CellContentClick(object sender, DataGridViewCellEventArgs e)
{
if (e.RowIndex < 0)
{
return;
}
var row = dataGridView1.Rows[e.RowIndex];
if (e.ColumnIndex == colPeptide.Index)
{
var peptideSequence = row.Cells[e.ColumnIndex].Value as string;
if (string.IsNullOrEmpty(peptideSequence))
{
return;
}
using (var session = Workspace.OpenSession())
{
var peptideAnalysisIds =
session.CreateQuery(
"SELECT pa.Id FROM DbPeptideAnalysis pa WHERE pa.Peptide.Sequence = :sequence")
.SetParameter("sequence", Peptide.TrimSequence(peptideSequence))
.List();
if (peptideAnalysisIds.Count >= 0)
{
PeptideAnalysisFrame.ShowPeptideAnalysis(
TurnoverForm.Instance.LoadPeptideAnalysis((long)peptideAnalysisIds[0]));
}
}
return;
}
if (e.ColumnIndex == colProteinKey.Index)
{
var halfLifeForm = new HalfLifeForm(Workspace)
{
Peptide = Peptide.TrimSequence(Convert.ToString(row.Cells[colPeptide.Index].Value) ?? ""),
ProteinName = Convert.ToString(row.Cells[colProteinName.Index].Value),
MinScore = double.Parse(tbxMinScore.Text),
};
halfLifeForm.Show(DockPanel, DockState);
}
}
private void BtnShowGraphOnClick(object sender, EventArgs e)
{
var halfLifeForm = new HalfLifeForm(Workspace)
{
Peptide = Peptide.Sequence,
ProteinName = Peptide.ProteinName,
};
halfLifeForm.Show(DockPanel, DockState);
}
private EventHandler GetClickEventHandler(HalfLifeCalculationType halfLifeCalculationType)
{
return (sender, args) =>
{
var cohortBuilder = new StringBuilder();
if (!string.IsNullOrEmpty(Cohort))
{
cohortBuilder.Append(Cohort);
}
if (!string.IsNullOrEmpty(Sample))
{
if (cohortBuilder.Length > 0)
{
cohortBuilder.Append(" ");
}
cohortBuilder.Append(Sample);
}
var halfLifeForm = new HalfLifeForm(_form.Workspace)
{
Peptide = _displayRow.Peptide == null ? "" : _displayRow.Peptide.Sequence,
ProteinName = _displayRow.ProteinName,
Cohort = cohortBuilder.ToString(),
};
halfLifeForm.SetHalfLifeSettings(_displayRow.GetHalfLifeCalculator().HalfLifeSettings);
halfLifeForm.Show(_form.DockPanel, _form.DockState);
};
}
private void dataGridView1_CellContentClick(object sender, DataGridViewCellEventArgs e)
{
if (e.RowIndex < 0)
{
return;
}
var row = dataGridView1.Rows[e.RowIndex];
if (e.ColumnIndex == colPeptide.Index)
{
var peptideSequence = row.Cells[e.ColumnIndex].Value as string;
if (string.IsNullOrEmpty(peptideSequence))
{
return;
}
using (var session = Workspace.OpenSession())
{
var peptideAnalysisIds =
session.CreateQuery(
"SELECT pa.Id FROM DbPeptideAnalysis pa WHERE pa.Peptide.Sequence = :sequence")
.SetParameter("sequence", Peptide.TrimSequence(peptideSequence))
.List();
if (peptideAnalysisIds.Count >= 0)
{
PeptideAnalysisFrame.ShowPeptideAnalysis(
TurnoverForm.Instance.LoadPeptideAnalysis((long) peptideAnalysisIds[0]));
}
}
return;
}
if (e.ColumnIndex == colProteinKey.Index)
{
var halfLifeForm = new HalfLifeForm(Workspace)
{
Peptide = Peptide.TrimSequence(Convert.ToString(row.Cells[colPeptide.Index].Value) ?? ""),
ProteinName = Convert.ToString(row.Cells[colProteinName.Index].Value),
MinScore = double.Parse(tbxMinScore.Text),
};
halfLifeForm.Show(DockPanel, DockState);
}
}
private void ShowHalfLifeForm(Peptide peptide, string proteinName, string cohort)
{
if (0 != (GetKeyState(0x10) & 0x8000))
{
var halfLifeRowDataForm = new HalfLifeRowDataForm(_form.Workspace)
{
Protein = proteinName,
};
if (peptide != null)
{
halfLifeRowDataForm.Peptide = peptide.ToString();
}
var resultData = HalfLives[cohort].Value;
halfLifeRowDataForm.RowDatas = resultData.RowDatas;
halfLifeRowDataForm.Show(_form.DockPanel, _form.DockState);
return;
}
var halfLifeForm = new HalfLifeForm(_form.Workspace)
{
Peptide = peptide == null ? "" : peptide.Sequence,
ProteinName = proteinName,
Cohort = cohort,
};
halfLifeForm.SetHalfLifeSettings(_form.HalfLifeSettings);
for (int i = 0; i < _form.checkedListBoxTimePoints.Items.Count; i++)
{
halfLifeForm.SetTimePointExcluded((double)_form.checkedListBoxTimePoints.Items[i],
!_form.checkedListBoxTimePoints.GetItemChecked(i));
}
halfLifeForm.Show(_form.DockPanel, _form.DockState);
}
